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SCNpilot_cont_750_p_scaffold_2159_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_p_scaffold_2159_curated_trna_1
unknown

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131..204
DNA (74bp)
transferRNA
SCNpilot_cont_750_p_scaffold_2159_curated_1
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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268..639
DNA (372bp) protein (124aa)
preprotein translocase subunit SecE n=1 Tax=Aeromonas caviae RepID=UPI00021989D8
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
secE; Preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
SCNpilot_cont_750_p_scaffold_2159_curated_2
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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649..1200
DNA (552bp) protein (184aa)
transcription antitermination protein NusG n=1 Tax=Aeromonas caviae RepID=UPI00021989D7
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG
SCNpilot_cont_750_p_scaffold_2159_curated_3
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1335..1763
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=2 Tax=Bacteria RepID=K1J822_AERHY
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
rplK; 50S ribosomal protein L11
SCNpilot_cont_750_p_scaffold_2159_curated_4
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1768..2469
DNA (702bp) protein (234aa)
50S ribosomal protein L1 n=1 Tax=Aeromonas caviae RepID=UPI0001184DD5
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_cont_750_p_scaffold_2159_curated_5
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2726..3226
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=6 Tax=Aeromonas veronii RepID=F4DF93_AERVB
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1073385 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii AMC35.;"
SCNpilot_cont_750_p_scaffold_2159_curated_6
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3278..3643
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=1 Tax=Aeromonas caviae RepID=UPI00021989D5
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_cont_750_p_scaffold_2159_curated_7
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3866..7894
DNA (4029bp) protein (1343aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=6 Tax=Bacteria RepID=RPOB_AERHH
SCNpilot_cont_750_p_scaffold_2159_curated_8
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7986..12290
DNA (4305bp) protein (1435aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Aeromonas caviae RepID=UPI00021989D3
SCNpilot_cont_750_p_scaffold_2159_curated_9
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12488..13204
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Aeromonas caviae RepID=UPI00021989D2
Uncharacterized protein {ECO:0000313|EMBL:KEP90212.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
hypothetical protein
SCNpilot_cont_750_p_scaffold_2159_curated_10
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13231..13611
DNA (381bp) protein (127aa)
endoribonuclease L-PSP n=1 Tax=Aeromonas caviae RepID=UPI00021989D1
Regulator {ECO:0000313|EMBL:KDV03945.1}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
translation initiation inhibitor; K07567 TdcF protein
SCNpilot_cont_750_p_scaffold_2159_curated_11
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13698..14090
DNA (393bp) protein (131aa)
sulfur transfer complex subunit TusD n=1 Tax=Aeromonas caviae RepID=UPI00021989D0
Sulfur transfer complex subunit TusD {ECO:0000313|EMBL:KEP90956.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
intracellular sulfur oxidation protein DsrE
SCNpilot_cont_750_p_scaffold_2159_curated_12
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14100..14456
DNA (357bp) protein (119aa)
DsrF protein n=1 Tax=Aeromonas media WS RepID=K2I664_AERME
Sulfur relay protein TusC {ECO:0000313|EMBL:KGY71077.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
DsrF protein
SCNpilot_cont_750_p_scaffold_2159_curated_13
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14464..14742
DNA (279bp) protein (93aa)
intracellular sulfur oxidation protein DsrH n=1 Tax=Aeromonas caviae RepID=UPI00021989CE
Sulfur relay protein TusB {ECO:0000313|EMBL:KGY68502.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
dsrH; intracellular sulfur oxidation protein DsrH; K07237 tRNA 2-thiouridine synthesizing protein B
SCNpilot_cont_750_p_scaffold_2159_curated_14
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14924..15298
DNA (375bp) protein (125aa)
30S ribosomal protein S12 n=12 Tax=Aeromonas RepID=RS12_AERHH
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1347420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii Hm21.;"
SCNpilot_cont_750_p_scaffold_2159_curated_15
Aeromonas sp. HZM, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15392..15862
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Aeromonas caviae RepID=UPI00021989CD
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1454008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas sp. HZM.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
SCNpilot_cont_750_p_scaffold_2159_curated_16
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15938..18043
DNA (2106bp) protein (702aa)
Elongation factor G n=5 Tax=Bacteria RepID=K1JIZ9_AERHY
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
elongation factor G
SCNpilot_cont_750_p_scaffold_2159_curated_17
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18098..18217
DNA (120bp) protein (40aa)
Elongation factor Tu n=1 Tax=Aeromonas veronii AMC34 RepID=K1J7U4_9GAMM
elongation factor Tu
Elongation factor Tu {ECO:0000313|EMBL:EQC04026.1}; Flags: Fragment;; TaxID=1324960 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida subsp. pectinolytica 34mel.;"
Displaying 18 items

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