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SCNpilot_expt_1000_bf_scaffold_904_curated

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_904_curated_1
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..457)
DNA (456bp) protein (152aa)
ABC transporter substrate-binding protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNG4_PUSST
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AEC21631.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_expt_1000_bf_scaffold_904_curated_2
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(639..1553)
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20XI2_RHOPB
Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family) {ECO:0000313|EMBL:KIL98564.1}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_904_curated_3
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1676..2641
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036E4FE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL10956.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_904_curated_4
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2699..3775
DNA (1077bp) protein (359aa)
tartrate dehydrogenase (EC:4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Tartrate dehydrogenase {ECO:0000313|EMBL:ACL56440.1}; EC=4.1.1.73 {ECO:0000313|EMBL:ACL56440.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Tartrate dehydrogenase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8INB4_METNO
SCNpilot_expt_1000_bf_scaffold_904_curated_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4021..4779)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PVV3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42503.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_904_curated_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4827..5567)
DNA (741bp) protein (247aa)
Branched-chain amino acid transport ATP-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKG7_9BRAD
Branched-chain amino acid transport ATP-binding protein {ECO:0000313|EMBL:EGP08336.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_904_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5560..6306)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQA2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41705.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_904_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6299..7234)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLQ0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41704.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_904_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7231..8097)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTM1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41703.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_904_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8131..8286)
DNA (156bp) protein (52aa)
Putative branched-chain amino acid transporter substrate-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKG3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41702.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_904_curated_11
unknown

Not on your lists

8479..9279
DNA (801bp) protein (267aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_904_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9501..10403
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJI2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41701.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_904_curated_13
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10706..11800
DNA (1095bp) protein (365aa)
beta-N-acetylhexosaminidase (EC:3.2.1.52)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Beta-N-acetylhexosaminidase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y5C0_PARAH
SCNpilot_expt_1000_bf_scaffold_904_curated_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11802..12365
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUU8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30008.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_904_curated_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12362..12760
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NI17_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30007.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Actinomycin synthetase II
SCNpilot_expt_1000_bf_scaffold_904_curated_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12858..15476
DNA (2619bp) protein (873aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NI17_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30007.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
polyketide synthase family protein
SCNpilot_expt_1000_bf_scaffold_904_curated_17
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15585..17330
DNA (1746bp) protein (582aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EGO94077.1}; EC=4.2.1.9 {ECO:0000313|EMBL:EGO94077.1};; Flags: Fragment;; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase (Fragment) n=1 Tax=Acidiphilium sp. PM RepID=F7S9U8_9PROT
SCNpilot_expt_1000_bf_scaffold_904_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17400..18611)
DNA (1212bp) protein (404aa)
gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Amidase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKD4_9BRAD
Amidase {ECO:0000313|EMBL:EGP08303.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_904_curated_19
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18662..19345)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E8924D
Uncharacterized protein {ECO:0000313|EMBL:GAJ37924.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_904_curated_20
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19329..20027)
DNA (699bp) protein (233aa)
ABC transporter ATP-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002D869B4
High-affinity branched-chain amino acid transport ATP-binding protein BivF {ECO:0000313|EMBL:GAJ37923.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_904_curated_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20024..20770)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PIJ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42467.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_904_curated_22
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20767..21693)
DNA (927bp) protein (309aa)
ABC transporter permease protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKD0_9BRAD
ABC transporter permease protein {ECO:0000313|EMBL:EGP08299.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inner-membrane translocator
SCNpilot_expt_1000_bf_scaffold_904_curated_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21690..22586)
DNA (897bp) protein (299aa)
High-affinity branched-chain amino acid transport system permease protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKC9_9BRAD
High-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:EGP08298.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_904_curated_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22652..23947)
DNA (1296bp) protein (432aa)
ABC-type transport system periplasmic substrate-binding protein n=2 Tax=Bradyrhizobiaceae RepID=F7QKC8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42464.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_904_curated_25
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24004..24384)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PVR5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08296.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_904_curated_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24597..25115)
DNA (519bp) protein (173aa)
oxygenase n=1 Tax=Afipia birgiae RepID=UPI00030E0293
Uncharacterized protein {ECO:0000313|EMBL:EKS42461.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
FMN-binding flavin reductase
SCNpilot_expt_1000_bf_scaffold_904_curated_27
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25317..26786)
DNA (1470bp) protein (490aa)
2-hydroxymuconic semialdehyde dehydrogenase; K10217 aminomuconate-semialdehyde dehydrogenase [EC:1.2.1.32]
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Methyloversatilis universalis RepID=UPI00037682F6
Aldehyde dehydrogenase {ECO:0000313|EMBL:EDM83237.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
SCNpilot_expt_1000_bf_scaffold_904_curated_28
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27116..27694)
DNA (579bp) protein (193aa)
MarR family transcriptional regulator n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B2AE8
marR; regulatory protein
Regulatory protein {ECO:0000313|EMBL:BAF90189.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_904_curated_29
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27843..29519)
DNA (1677bp) protein (559aa)
Thiamine pyrophosphate protein TPP binding domain protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G3F2_9BURK
Thiamine pyrophosphate protein TPP binding domain protein {ECO:0000313|EMBL:EDT09473.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
thiamine pyrophosphate protein
SCNpilot_expt_1000_bf_scaffold_904_curated_30
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29565..31067)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YN60_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25402.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
Displaying items 1-30 of 108 in total

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