ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1266_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1266_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..146
DNA (144bp) protein (48aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHH0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09459.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1266_curated_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154..1845
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXQ5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33971.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
HemY protein; K02498 HemY protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_3
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2205..3182)
DNA (978bp) protein (326aa)
Uncharacterized protein UPF0065 n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKK8_POLNA
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_expt_1000_bf_scaffold_1266_curated_4
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3234..4457)
DNA (1224bp) protein (408aa)
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QNL5_9BRAD
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:EIG61371.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
FAD-binding monooxygenase protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_5
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4726..5868)
DNA (1143bp) protein (381aa)
Diguanylate cyclase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GEA4_9BRAD
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:BAL79091.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_1000_bf_scaffold_1266_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6060..7031
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DC771D
Uncharacterized protein {ECO:0000313|EMBL:EKS34789.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7287..8417
DNA (1131bp) protein (377aa)
C4-dicarboxylate ABC transporter n=1 Tax=Afipia birgiae RepID=UPI00030F7D0D
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS34791.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
TRAP dicarboxylate transporter
SCNpilot_expt_1000_bf_scaffold_1266_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8527..9195
DNA (669bp) protein (223aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0002F7B26D
Uncharacterized protein {ECO:0000313|EMBL:EKS34792.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9192..10937
DNA (1746bp) protein (582aa)
Possible TRAP C4-dicarboxylate transport system permeaseDctM subunit n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3ME36_RHISN
TRAP C4-dicarboxylate transport system permease subunit DctM
Possible TRAP C4-dicarboxylate transport system permeaseDctM subunit {ECO:0000313|EMBL:ACP25705.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1266_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11028..12437
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P270_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34794.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12635..13114
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHI2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09471.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13180..13956
DNA (777bp) protein (259aa)
Short-chain dehydrogenase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHI3_9BRAD
Short-chain dehydrogenase {ECO:0000313|EMBL:EGP09472.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
short-chain dehydrogenase/reductase SDR; K07124
SCNpilot_expt_1000_bf_scaffold_1266_curated_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14115..14948
DNA (834bp) protein (278aa)
glutamine amidotransferase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHI4_9BRAD
GMP synthase {ECO:0000313|EMBL:EGP09473.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1266_curated_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15113..16336)
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHI6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09475.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein; K06889; K07397 putative redox protein rbh
SCNpilot_expt_1000_bf_scaffold_1266_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16888..17178
DNA (291bp) protein (97aa)
Integral membrane protein YggT n=2 Tax=Bradyrhizobiaceae RepID=F7QHI7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33985.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
yggt family protein; K02221 YggT family protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17637..18446
DNA (810bp) protein (270aa)
folD; bifunctional protein FolD (EC:1.5.1.5 3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
5,10-methylene-tetrahydrofolate dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI000315C0B8
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1266_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18578..20059)
DNA (1482bp) protein (494aa)
peptidase M20; K13049 carboxypeptidase PM20D1 [EC:3.4.17.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P280_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34804.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1266_curated_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20106..20636)
DNA (531bp) protein (177aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
inorganic pyrophosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZS0_9BRAD
SCNpilot_expt_1000_bf_scaffold_1266_curated_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20762..21313)
DNA (552bp) protein (184aa)
Histone acetyltransferase HPA2-like protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHJ2_9BRAD
Histone acetyltransferase HPA2-like protein {ECO:0000313|EMBL:EGP09481.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_1266_curated_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21438..22367
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHJ3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09482.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1266_curated_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22445..23347
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NUJ0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33992.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K07454 putative restriction endonuclease rbh
SCNpilot_expt_1000_bf_scaffold_1266_curated_22
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23605..24807)
DNA (1203bp) protein (401aa)
hypothetical protein; K00274 monoamine oxidase [EC:1.4.3.4] rbh
Amine oxidase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHJ4_9BRAD
Amine oxidase {ECO:0000313|EMBL:EGP09483.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Displaying 22 items

View Taxonomy