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SCNpilot_expt_1000_bf_scaffold_2217_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2217_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..341
DNA (339bp) protein (113aa)
Permease n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9M1_9RHIZ
Permease {ECO:0000313|EMBL:AHB47162.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
permease; K07090
SCNpilot_expt_1000_bf_scaffold_2217_curated_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

338..1090
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ96_PARL1
Uncharacterized protein {ECO:0000313|EMBL:KGM32851.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_3
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1094..1810)
DNA (717bp) protein (239aa)
Metallophosphoesterase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LVA4_METRJ
metallophosphoesterase; K06953
Metallophosphoesterase {ECO:0000313|EMBL:ACB22549.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_2217_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1800..4256)
DNA (2457bp) protein (819aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
DEAD/H associated domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ93_PARL1
DEAD/H associated domain protein {ECO:0000313|EMBL:ABS62076.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_2217_curated_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4296..5033)
DNA (738bp) protein (246aa)
cAMP-binding protein n=2 Tax=Rhizobium leguminosarum RepID=J0BFE9_RHILV
CarD family transcriptional regulator {ECO:0000313|EMBL:KFG66501.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
cyclic nucleotide-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_6
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5329..6093)
DNA (765bp) protein (255aa)
Alpha/beta hydrolase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X318_9RHIZ
Alpha/beta hydrolase {ECO:0000313|EMBL:ERI15204.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_7
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6129..6509
DNA (381bp) protein (127aa)
Membrane protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U1ZL15_9PSED
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
SCNpilot_expt_1000_bf_scaffold_2217_curated_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6506..7918)
DNA (1413bp) protein (471aa)
alpha,alpha-trehalose-phosphate synthase; K00697 trehalose 6-phosphate synthase [EC:2.4.1.15]
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000256|RuleBase:RU362045}; EC=2.4.1.15 {ECO:0000256|RuleBase:RU362045};; Osmoregulatory trehalose synthesis protein A {ECO:0000256|RuleBase:RU362045}; Trehalose-6-phosphate synthase {ECO:0000256|RuleBase:RU362045}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG23_XANP2
SCNpilot_expt_1000_bf_scaffold_2217_curated_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7900..8844)
DNA (945bp) protein (315aa)
Glycoside hydrolase 15-related protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SN66_NITWN
glycoside hydrolase 15-related
Glycoside hydrolase 15-related protein {ECO:0000313|EMBL:ABA06275.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_2217_curated_10
unknown

Not on your lists

9148..9861
DNA (714bp) protein (238aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2217_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9738..10550)
DNA (813bp) protein (271aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
Trehalose-phosphatase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P443_9BRAD
SCNpilot_expt_1000_bf_scaffold_2217_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10554..10862)
DNA (309bp) protein (103aa)
MFS transporter n=1 Tax=Afipia birgiae RepID=UPI000370877F
Uncharacterized protein {ECO:0000313|EMBL:EKS33752.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative sugar transport protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_13
unknown

Not on your lists

11404..12012
DNA (609bp) protein (203aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2217_curated_14
unknown

Not on your lists

12233..12394
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2217_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12502..12987
DNA (486bp) protein (162aa)
(2Fe-2S)-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Carbon monoxide dehydrogenase small chain n=2 Tax=Bradyrhizobiaceae RepID=F7QH10_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33755.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_2217_curated_16
unknown

Not on your lists

comp(13180..13749)
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2217_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13906..15423
DNA (1518bp) protein (506aa)
carbon-monoxide dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002E8DB02
Carbon-monoxide dehydrogenase, large subunit {ECO:0000313|EMBL:EKS34453.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2217_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15436..16236
DNA (801bp) protein (267aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P136_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34454.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2217_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16503..17474
DNA (972bp) protein (324aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11]
6-phosphofructokinase n=1 Tax=Afipia birgiae RepID=UPI0002DD2A99
SCNpilot_expt_1000_bf_scaffold_2217_curated_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17699..18418
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5Q8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33748.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
OmpA domain-containing protein transmembrane region-containing protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18528..19412)
DNA (885bp) protein (295aa)
beta-lactamase domain-containing protein (EC:3.1.2.6)
Beta-lactamase-like protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGW9_9BRAD
Beta-lactamase-like protein {ECO:0000313|EMBL:EGP09575.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_2217_curated_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19507..19842
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NX70_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33741.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
AsrR family transcriptional regulator; K03892 ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2217_curated_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19859..20395
DNA (537bp) protein (179aa)
Rhodanese-related sulfurtransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGW7_9BRAD
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EGP09573.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative detoxifying sulfurtransferase; inner membrane protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20439..21215
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZ08_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34431.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21222..23318)
DNA (2097bp) protein (699aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P425_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34430.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative dimethyl sulfoxide reductase(DMSO reductase)
SCNpilot_expt_1000_bf_scaffold_2217_curated_26
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24074..25387
DNA (1314bp) protein (438aa)
Carbon monoxide dehydrogenase large chain n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGW4_9BRAD
Carbon monoxide dehydrogenase large chain {ECO:0000313|EMBL:EGP09570.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
carbon monoxide dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2217_curated_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25330..25743
DNA (414bp) protein (138aa)
carbon monoxide dehydrogenase; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Carbon monoxide dehydrogenase large chain n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGW4_9BRAD
Carbon monoxide dehydrogenase large chain {ECO:0000313|EMBL:EGP09570.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_2217_curated_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25951..26826)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NX58_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33736.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2217_curated_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27062..27334
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003047AAA
Uncharacterized protein {ECO:0000313|EMBL:EKS34427.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2217_curated_30
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27477..28673
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZ63_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33734.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
periplasmic substrate binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Displaying items 1-30 of 53 in total

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