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SCNpilot_expt_1000_bf_scaffold_1469_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1469_curated_1
unknown

Not on your lists

comp(2..139)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1469_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(367..2475)
DNA (2109bp) protein (703aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7N6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34403.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
outer membrane hemin/siderophore receptor protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2664..3833)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NVQ0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34402.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
PepSY-associated TM helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4093..6363
DNA (2271bp) protein (757aa)
TonB-dependent siderophore receptor n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIH9_9BRAD
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EGP09070.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
TonB-dependent siderophore receptor
SCNpilot_expt_1000_bf_scaffold_1469_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6489..7169
DNA (681bp) protein (227aa)
hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase Nham_3637 {ECO:0000255|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000255|HAMAP-Rule:MF_00657};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PKHD-type hydroxylase Nham_3637 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Y3637_NITHX rbh
SCNpilot_expt_1000_bf_scaffold_1469_curated_6
unknown

Not on your lists

comp(7240..7350)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1469_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7603..9462
DNA (1860bp) protein (620aa)
long-chain-fatty-acid--CoA ligase; K12508 feruloyl-CoA synthase [EC:6.2.1.34]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Y9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34395.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1469_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9501..10703
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0Y0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34394.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
twin-arginine translocation pathway signal; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_9
unknown

Not on your lists

comp(11144..11266)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1469_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11553..11843
DNA (291bp) protein (97aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI000306C640
Uncharacterized protein {ECO:0000313|EMBL:EKS33290.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11847..12827
DNA (981bp) protein (327aa)
Benzoate transport protein, inner-membrane translocator n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QII7_9BRAD
Benzoate transport protein, inner-membrane translocator {ECO:0000313|EMBL:EGP09078.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12820..13587
DNA (768bp) protein (256aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002F1F0A3
Uncharacterized protein {ECO:0000313|EMBL:EKS34391.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13584..14294
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Y5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34390.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14536..14961)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXU6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33294.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1469_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15018..15920)
DNA (903bp) protein (301aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Shikimate kinase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0W1_9BRAD
hypothetical protein; K15546 XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1469_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16079..17629
DNA (1551bp) protein (517aa)
4-hydroxybenzoate--CoA ligase n=1 Tax=Afipia birgiae RepID=UPI0002D3E634
Benzoate-CoA ligase {ECO:0000313|EMBL:EKS34387.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
acetyl-CoA synthetase
SCNpilot_expt_1000_bf_scaffold_1469_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17781..18656
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYW8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34386.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18888..20588
DNA (1701bp) protein (567aa)
hypothetical protein; K15513 benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44]
Benzoyl-CoA-dihydrodiol lyase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Y1_9BRAD
Benzoyl-CoA-dihydrodiol lyase {ECO:0000313|EMBL:EKS34385.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1469_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20719..22164
DNA (1446bp) protein (482aa)
boxB; benzoyl-CoA oxygenase subunit B; K15512 benzoyl-CoA 2,3-dioxygenase component B [EC:1.14.12.21]
Benzoyl-CoA oxygenase, B subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0X0_9BRAD
Benzoyl-CoA oxygenase, B subunit {ECO:0000313|EMBL:EKS34384.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1469_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22286..23485
DNA (1200bp) protein (400aa)
boxA; benzoyl-CoA oxygenase subunit A (EC:1.18.1.2); K15511 benzoyl-CoA 2,3-dioxygenase component A [EC:1.14.12.21]
Benzoyl-CoA oxygenase/reductase, BoxA protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7L9_9BRAD
Benzoyl-CoA oxygenase/reductase, BoxA protein {ECO:0000313|EMBL:EKS34383.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1469_curated_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23644..24447)
DNA (804bp) protein (268aa)
kduD; 2-deoxy-D-gluconate 3-dehydrogenase (EC:1.1.1.125); K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] rbh
2-deoxy-D-gluconate 3-dehydrogenase n=2 Tax=Bradyrhizobiaceae RepID=F7QIJ7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33301.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1469_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24695..25777)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DAFAEC
Uncharacterized protein {ECO:0000313|EMBL:EKS34380.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_1469_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25961..27355
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0W6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34379.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
OmpA/MotB; K03286 OmpA-OmpF porin, OOP family
SCNpilot_expt_1000_bf_scaffold_1469_curated_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27516..27812
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIK1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09092.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1469_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28012..29064
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NYW1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34376.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K07027
SCNpilot_expt_1000_bf_scaffold_1469_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29107..30423
DNA (1317bp) protein (439aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phoR; phosphate regulon, two-component sensor histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3X2_9BRAD
SCNpilot_expt_1000_bf_scaffold_1469_curated_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30559..31068)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0W2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34374.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GcrA cell cycle regulator; K13583 GcrA cell cycle regulator
SCNpilot_expt_1000_bf_scaffold_1469_curated_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31610..32833
DNA (1224bp) protein (408aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
argD; acetylornithine transaminase (EC:2.6.1.11); K00821 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
Acetylornithine aminotransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7L0_9BRAD
SCNpilot_expt_1000_bf_scaffold_1469_curated_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32830..33756
DNA (927bp) protein (309aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ornithine carbamoyltransferase (EC:2.1.3.3)
ornithine carbamoyltransferase n=1 Tax=Afipia birgiae RepID=UPI00031F42B2
SCNpilot_expt_1000_bf_scaffold_1469_curated_30
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33941..34159
DNA (219bp) protein (73aa)
molecular chaperone Hsp33 n=1 Tax=Afipia birgiae RepID=UPI0002DE501B
33 kDa chaperonin {ECO:0000256|SAAS:SAAS00038673}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hslO; Hsp33-like chaperonin; K04083 molecular chaperone Hsp33
Displaying 30 items

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