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SCNpilot_expt_1000_bf_scaffold_1662_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1662_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..790
DNA (789bp) protein (263aa)
Phosphoserine phosphatase {ECO:0000313|EMBL:EGP06440.1}; EC=3.1.3.3 {ECO:0000313|EMBL:EGP06440.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
phosphoserine phosphatase; K01079 phosphoserine phosphatase [EC:3.1.3.3]
phosphoserine phosphatase n=1 Tax=Afipia birgiae RepID=UPI00031153F3
SCNpilot_expt_1000_bf_scaffold_1662_curated_2
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(845..1951)
DNA (1107bp) protein (369aa)
Radical SAM domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGN7_XANP2
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABS67180.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_3
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1896..2795)
DNA (900bp) protein (300aa)
Glycosyl transferase family 25 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGN6_XANP2
glycosyl transferase family protein; K07270 glycosyl transferase, family 25
Glycosyl transferase family 25 {ECO:0000313|EMBL:ABS67179.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3084..4595)
DNA (1512bp) protein (504aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-]
HtrA protease/chaperone protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QQR3_9BRAD
HtrA protease/chaperone protein {ECO:0000313|EMBL:EGP06441.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4771..4971)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1S5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36547.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K09937 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5014..5913)
DNA (900bp) protein (300aa)
HflC protein; K04087 membrane protease subunit HflC [EC:3.4.-.-]
Protein HflC n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDV8_9BRAD
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5910..7052)
DNA (1143bp) protein (381aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
HflK protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P717_9BRAD
HflK protein {ECO:0000313|EMBL:EKS35784.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7409..7948)
DNA (540bp) protein (180aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
folA; dihydrofolate reductase FolA (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAA8_9BRAD
SCNpilot_expt_1000_bf_scaffold_1662_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7945..8739)
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
thyA; thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P2W5_9BRAD
SCNpilot_expt_1000_bf_scaffold_1662_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8880..9863)
DNA (984bp) protein (328aa)
Tricarboxylate transport protein n=2 Tax=Bradyrhizobiaceae RepID=F7QQS0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35787.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10007..11527)
DNA (1521bp) protein (507aa)
Tricarboxylate transport membrane protein n=2 Tax=Bradyrhizobiaceae RepID=F7QQS1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35788.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11535..12026)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P722_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36554.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
tripartite tricarboxylate transporter TctA; K07794 putative tricarboxylic transport membrane protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13091..13597
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1T5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36557.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K09985 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13734..15137
DNA (1404bp) protein (468aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
fumC; fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDW7_9BRAD
SCNpilot_expt_1000_bf_scaffold_1662_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15374..15565
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P727_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36559.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15562..15834
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAB9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36560.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16089..16427
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4Y5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36561.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
arylsulfate sulfotransferase-like protein
SCNpilot_expt_1000_bf_scaffold_1662_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16429..20076)
DNA (3648bp) protein (1216aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1T9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36562.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1662_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20208..21068
DNA (861bp) protein (287aa)
Cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P510_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35799.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21193..21936)
DNA (744bp) protein (248aa)
hydratase/decarboxylase; K01617 4-oxalocrotonate decarboxylase [EC:4.1.1.77]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P846_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35800.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22026..23441)
DNA (1416bp) protein (472aa)
Glycolate oxidase, subunit GlcD n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAC4_9BRAD
Glycolate oxidase, subunit GlcD {ECO:0000313|EMBL:EKS36565.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
D-lactate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1662_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23542..24060
DNA (519bp) protein (173aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4Z1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36566.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_23
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24095..24268)
DNA (174bp) protein (58aa)
UPF0391 membrane protein S23_17730 n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G2K2_9BRAD
conserved exported hypothetical protein
UPF0391 membrane protein S23_17730 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_1000_bf_scaffold_1662_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24646..25623
DNA (978bp) protein (326aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDX6_9BRAD
Displaying 24 items

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