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SCNpilot_expt_1000_bf_scaffold_1664_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1664_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..393)
DNA (393bp) protein (131aa)
MarR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI00030FA1C7
Uncharacterized protein {ECO:0000313|EMBL:EKS41755.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1664_curated_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(413..1117)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PSL1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42525.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative high-affinity branched-chain amino acid transport ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1664_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1114..1905)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTU2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41753.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1664_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1902..3788)
DNA (1887bp) protein (629aa)
ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI000312E358
Uncharacterized protein {ECO:0000313|EMBL:EKS41752.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1664_curated_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3846..5066)
DNA (1221bp) protein (407aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKI8_9BRAD
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EGP08357.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1664_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5182..5766)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DA5281
Uncharacterized protein {ECO:0000313|EMBL:EKS41750.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1664_curated_7
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5797..6717)
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKI5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08354.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein; K09740 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1664_curated_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6714..8177)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PVW7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42518.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1664_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8473..8961
DNA (489bp) protein (163aa)
(2Fe-2S)-binding protein n=1 Tax=Afipia birgiae RepID=UPI00031CEE55
Uncharacterized protein {ECO:0000313|EMBL:EKS42517.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative isoquinoline 1-oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1664_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8961..12521
DNA (3561bp) protein (1187aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQG0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41745.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1664_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12585..13862
DNA (1278bp) protein (426aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11); K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Nicotinate phosphoribosyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLV8_9BRAD
SCNpilot_expt_1000_bf_scaffold_1664_curated_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14044..15765
DNA (1722bp) protein (574aa)
ATPase family protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BKJ3_OLICM
sensor histidine kinase
ATPase family protein {ECO:0000313|EMBL:AEI05366.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying 12 items

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