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SCNpilot_expt_1000_bf_scaffold_2357_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2357_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84..1208)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030594AE
Uncharacterized protein {ECO:0000313|EMBL:EGP06238.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2357_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1210..1758)
DNA (549bp) protein (183aa)
RNA polymerase sigma70 factor n=1 Tax=Afipia birgiae RepID=UPI0002FBFCFC
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS36756.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
FecI-like sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_2357_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2041..2457)
DNA (417bp) protein (139aa)
Flagellar export protein FliJ n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2I8_9BRAD
Flagellar export protein FliJ {ECO:0000313|EMBL:EKS36757.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
fliJ; flagellar export protein FliJ
SCNpilot_expt_1000_bf_scaffold_2357_curated_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2564..3889)
DNA (1326bp) protein (442aa)
fliI; flagellum-specific ATP synthase; K02412 flagellum-specific ATP synthase [EC:3.6.3.14]
Flagellum-specific ATP synthase FliI n=2 Tax=Bradyrhizobiaceae RepID=F7QRN0_9BRAD
Flagellar protein export ATPase FliI {ECO:0000313|EMBL:EKS36003.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_2357_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4291..4992
DNA (702bp) protein (234aa)
Cell cycle response regulator CtrA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7P4_9BRAD
two component transcriptional regulator; K13584 two-component system, cell cycle response regulator CtrA
Cell cycle response regulator CtrA {ECO:0000313|EMBL:EKS36759.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2357_curated_6
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5171..6550)
DNA (1380bp) protein (460aa)
Chromate transporter, chromate ion transporter (CHR) family n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZD95_METPB
Chromate transporter protein {ECO:0000313|EMBL:KEC81478.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
chromate transporter; K07240 chromate transporter
SCNpilot_expt_1000_bf_scaffold_2357_curated_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6649..7515)
DNA (867bp) protein (289aa)
chemotaxis protein CheR; K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
chemotaxis protein CheR n=1 Tax=Afipia birgiae RepID=UPI0002EA4EC3
Uncharacterized protein {ECO:0000313|EMBL:EKS36006.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_2357_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7512..8672)
DNA (1161bp) protein (387aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]
chemotaxis protein CheY n=1 Tax=Afipia birgiae RepID=UPI00037962C5
SCNpilot_expt_1000_bf_scaffold_2357_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8761..9126)
DNA (366bp) protein (122aa)
chemotaxis protein CheY n=1 Tax=Afipia birgiae RepID=UPI0002D755A6
Uncharacterized protein {ECO:0000313|EMBL:EKS36765.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
response regulator receiver domain-containing protein; K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_expt_1000_bf_scaffold_2357_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9224..9694)
DNA (471bp) protein (157aa)
chemotaxis protein CheW n=1 Tax=Afipia birgiae RepID=UPI00031C5463
Uncharacterized protein {ECO:0000313|EMBL:EKS36009.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
CheW protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_1000_bf_scaffold_2357_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9706..12429)
DNA (2724bp) protein (908aa)
CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2J5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36767.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2357_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12616..13263)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P3G0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36011.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K13588 histidine phosphotransferase ChpT
SCNpilot_expt_1000_bf_scaffold_2357_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13463..14293
DNA (831bp) protein (277aa)
3'(2'),5'-bisphosphate nucleotidase; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
3'(2'),5'-bisphosphate nucleotidase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7Q3_9BRAD
3'(2'),5'-bisphosphate nucleotidase {ECO:0000313|EMBL:EKS36769.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2357_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14287..14757)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB09_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36770.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2357_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14919..15491
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031313BC
Uncharacterized protein {ECO:0000313|EMBL:EKS36014.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2357_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15638..16945
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037A68EC
Uncharacterized protein {ECO:0000313|EMBL:EKS36772.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2357_curated_17
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(17310..18407)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030F9E1C
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
SCNpilot_expt_1000_bf_scaffold_2357_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19077..19238)
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000365081A
Uncharacterized protein {ECO:0000313|EMBL:EKS36774.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Flp/Fap family protein; K02651 pilus assembly protein Flp/PilA
SCNpilot_expt_1000_bf_scaffold_2357_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19388..19606)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB14_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36775.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2357_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19674..19829)
DNA (156bp) protein (52aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5P8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36776.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2357_curated_21
unknown

Not on your lists

20061..20372
DNA (312bp) protein (104aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2357_curated_22
unknown

Not on your lists

20703..20903
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2357_curated_23
unknown

Not on your lists

20900..21193
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2357_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21461..22075
DNA (615bp) protein (205aa)
ErfK/YbiS/YcfS/YnhG-like protein n=2 Tax=Bradyrhizobiaceae RepID=F7QRP7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ42550.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_expt_1000_bf_scaffold_2357_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22288..23103
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037E0DFF
Uncharacterized protein {ECO:0000313|EMBL:EKS36778.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2357_curated_26
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23252..24424)
DNA (1173bp) protein (391aa)
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:EGP06261.1}; EC=1.3.8.4 {ECO:0000313|EMBL:EGP06261.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
acyl-CoA dehydrogenase domain-containing protein; K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
Isovaleryl-CoA dehydrogenase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRQ0_9BRAD
SCNpilot_expt_1000_bf_scaffold_2357_curated_27
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24834..26315)
DNA (1482bp) protein (494aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UAQ6_METS4
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; K03406 methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor {ECO:0000313|EMBL:ACA19030.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_2357_curated_28
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26475..27809
DNA (1335bp) protein (445aa)
Putative cytochrome P450 hydroxylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRQ2_9BRAD
Putative cytochrome P450 hydroxylase {ECO:0000313|EMBL:EGP06263.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_2357_curated_29
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27881..29104
DNA (1224bp) protein (408aa)
Acyl-CoA dehydrogenase, short-chain specific {ECO:0000313|EMBL:EGP06265.1}; EC=1.3.8.1 {ECO:0000313|EMBL:EGP06265.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
acyl-CoA dehydrogenase (EC:1.3.99.10); K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
Acyl-CoA dehydrogenase, short-chain specific n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRQ4_9BRAD
SCNpilot_expt_1000_bf_scaffold_2357_curated_30
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29278..30393
DNA (1116bp) protein (372aa)
carnitine dehydratase n=1 Tax=Afipia birgiae RepID=UPI0002FF2DA1
Uncharacterized protein {ECO:0000313|EMBL:EKS36026.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
L-carnitine dehydratase/bile acid-inducible protein F
Displaying items 1-30 of 48 in total

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