ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7020_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7020_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..939)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6A5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37021.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
NAD binding site:FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_7020_curated_2
unknown

Not on your lists

comp(1234..2388)
DNA (1155bp) protein (385aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7020_curated_3
unknown

Not on your lists

comp(2443..2724)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7020_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3022..3849
DNA (828bp) protein (276aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P899_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS37019.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GGDEF/EAL domain-containing protein
SCNpilot_expt_1000_bf_scaffold_7020_curated_5
unknown

Not on your lists

comp(3814..4305)
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7020_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4846..5316
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF53_9BRAD">RepID=K8PF53_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37018.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
glycerol-3-phosphate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_7020_curated_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6031..6396
DNA (366bp) protein (122aa)
potA3; spermidine/putrescine import ATP-binding protein PotA (EC:3.6.3.31); K11076 putrescine transport system ATP-binding protein
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Spermidine/putrescine ABC transporter ATP-binding subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JC30_OLICO
SCNpilot_expt_1000_bf_scaffold_7020_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6393..7307
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBM6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37015.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putrescine transport system permease PotH; K11075 putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7020_curated_9
unknown

Not on your lists

comp(7621..7902)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7020_curated_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8285..8950
DNA (666bp) protein (222aa)
Uncharacterized protein {ECO:0000313|EMBL:CEG07139.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_7020_curated_11
unknown

Not on your lists

9911..10297
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7020_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10492..11193
DNA (702bp) protein (234aa)
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A n=2 Tax=Bradyrhizobiaceae RepID=F7QFX6_9BRAD
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:EKS35196.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
3-ketoacid-coenzyme A transferase subunit A
SCNpilot_expt_1000_bf_scaffold_7020_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11218..11868
DNA (651bp) protein (217aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.6); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] rbh
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P697_9BRAD
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B {ECO:0000313|EMBL:EKS37011.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_7020_curated_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11927..13543)
DNA (1617bp) protein (539aa)
iron ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI000315F64D
Uncharacterized protein {ECO:0000313|EMBL:EKS35192.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
binding-protein-dependent transport systems inner membrane component; K02011 iron(III) transport system permease protein
SCNpilot_expt_1000_bf_scaffold_7020_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13569..14213)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P349_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37007.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
Displaying 15 items

View Taxonomy