ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3537_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3537_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1036
DNA (1035bp) protein (345aa)
Coenzyme B12-dependent class II ribonucleotide reductase {ECO:0000313|EMBL:EGP07182.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EGP07182.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
vitamin B12-dependent ribonucleotide reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Coenzyme B12-dependent class II ribonucleotide reductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNM8_9BRAD
SCNpilot_expt_1000_bf_scaffold_3537_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1233..2744
DNA (1512bp) protein (504aa)
Divergent AAA region n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F91_RHOPS
hypothetical protein
Divergent AAA region {ECO:0000313|EMBL:ABE37248.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_expt_1000_bf_scaffold_3537_curated_3
unknown

Not on your lists

3284..3454
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3537_curated_4
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3565..3714)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLS0_AFIFE
Glutathione S-transferase {ECO:0000313|EMBL:ERF81496.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3957..4934
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAQ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39687.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nagM2; NagM-like protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4971..5393)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNN3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07187.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
globin; K06886 hemoglobin
SCNpilot_expt_1000_bf_scaffold_3537_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5450..5650)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJH3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39685.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3537_curated_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5929..6570
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PNM0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EXL09102.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6669..6884
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PAT9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07192.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7049..7903)
DNA (855bp) protein (285aa)
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] rbh
3-hydroxybutyryl-CoA dehydrogenase n=2 Tax=Bradyrhizobiaceae RepID=F7QNN9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38667.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_3537_curated_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7991..8692)
DNA (702bp) protein (234aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA69_9BRAD
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD {ECO:0000313|EMBL:EFI50363.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
N-acetylmuramoyl-L-alanine amidase, family 2
SCNpilot_expt_1000_bf_scaffold_3537_curated_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8852..9073)
DNA (222bp) protein (74aa)
Putative lipoprotein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V643_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG08213.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
lipoprotein
SCNpilot_expt_1000_bf_scaffold_3537_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9243..9998
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NP24_AFIFE
Molybdate ABC transporter periplasmic molybdate-binding protein {ECO:0000313|EMBL:CEG06895.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
putative periplasmic molybdate-binding protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10056..10349)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDN1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39671.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_3537_curated_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10710..11690
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07PC8_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06206.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_3537_curated_16
unknown

Not on your lists

comp(11971..12144)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3537_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12328..12453
DNA (126bp) protein (42aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLK0_NITHX
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABE62897.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_3537_curated_18
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12642..12956
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PL76_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40245.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12970..13842)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EB3E1A
Uncharacterized protein {ECO:0000313|EMBL:EKS39669.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3537_curated_20
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14027..15706
DNA (1680bp) protein (560aa)
poxB; pyruvate dehydrogenase (EC:1.2.2.2); K00156 pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
Pyruvate dehydrogenase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0E9X4_9BURK
Pyruvate dehydrogenase {ECO:0000313|EMBL:EOA02511.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
SCNpilot_expt_1000_bf_scaffold_3537_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15812..16876)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PMS4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39668.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16957..17280)
DNA (324bp) protein (108aa)
ATP-dependent Clp protease adapter protein ClpS n=2 Tax=Bradyrhizobiaceae RepID=F7QM86_9BRAD
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
clpS; ATP-dependent Clp protease adaptor; K06891 ATP-dependent Clp protease adaptor protein ClpS
SCNpilot_expt_1000_bf_scaffold_3537_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17341..17547
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDM5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39666.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17650..18228
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DE558F
Uncharacterized protein {ECO:0000313|EMBL:EKS39664.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18272..18523)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000369EFE7
Uncharacterized protein {ECO:0000313|EMBL:EKS39663.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18705..19037
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAM3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39662.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19132..19713)
DNA (582bp) protein (194aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJE7_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKS39660.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19740..23453)
DNA (3714bp) protein (1238aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFX7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39659.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
mdtC1; multidrug resistance protein MdtC
SCNpilot_expt_1000_bf_scaffold_3537_curated_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23651..24049)
DNA (399bp) protein (133aa)
ComA-related protein n=2 Tax=Bradyrhizobiaceae RepID=F7QM77_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS40230.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
thioesterase superfamily protein
SCNpilot_expt_1000_bf_scaffold_3537_curated_30
unknown

Not on your lists

comp(24062..24244)
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying items 1-30 of 37 in total

View Taxonomy