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SCNpilot_expt_1000_bf_scaffold_1153_curated_15

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(14370..15269)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Afipia birgiae RepID=UPI0003825AE6 similarity UNIREF
DB: UNIREF100
  • Identity: 97.0
  • Coverage: 299.0
  • Bit_score: 577
  • Evalue 5.80e-162
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.3
  • Coverage: 299.0
  • Bit_score: 571
  • Evalue 7.60e-160
rpoH; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 92.0
  • Coverage: 299.0
  • Bit_score: 555
  • Evalue 9.70e-156

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
ATGGCCCGTGCCGCTACTCTGCCGGTTCTCAACGGAGAATCCGGCCTCGCTCATTATCTGTCCGAAATCCGCAAGTTTCCGATGCTGGAGCCGCAGCAGGAATACATGCTCGCCAAGCGTTGGCGCGAGCATGATGACCGCGATGCGGCGCATCAGCTCGTCACCAGCCATCTTCGCCTCGTGGCCAAGATCGCCATGGGCTATCGCGGCTACGGCCTGCCGATCTCCGAGGTGGTCTCGGAGGGCAATGTCGGCCTGATGCAGGCGGTGAAGCGGTTCGAGCCGGAGAAGGGCTTCCGCCTGGCCACCTATGCGATGTGGTGGATCAAGGCGTCGATCCAGGAATACATCCTGCGGTCGTGGTCGCTCGTGAAGATGGGCACCACGGCGAACCAGAAGAAGCTGTTCTTCAACCTGCGCAAGGCCAAGAGCAAGATCTCCGCGCTCGAAGAGGGCGATCTGCGCCCCGAGCATGTGAAGCAGATCGCGACCTCGCTCGGCGTCACCGAACAGGACGTTGTCGACATGAACCGCCGTCTCGGCGGCGATGCGTCGCTCAACGCGCCGATCCGTGACGACGGCGAACCCGGCGAATGGCAGGACTGGCTGGTCGACACCTCGCCCAACCAGGAAGCCATCATGGCGGAGAACGAGGAGTTCGATCATCGTCGCAGCGCCCTGACCGGCGCGATGGGCGTGCTCAATCCGCGCGAACGCCGCATCTTCGAGGCGCGGCGTCTGGCGGAAGAGCCGATGACGCTGGAAGACCTCGCCGCCGAATTCGGCGTGTCGCGCGAGCGCGTGCGGCAGATCGAGGTCCGCGCCTTCGAAAAGGTGCAGGCCGCGGTGAAGTCCACCATCGCGCGGCAGGAACATGCCGCGATGGAAGCGGCGTACTGA
PROTEIN sequence
Length: 300
MARAATLPVLNGESGLAHYLSEIRKFPMLEPQQEYMLAKRWREHDDRDAAHQLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALEEGDLRPEHVKQIATSLGVTEQDVVDMNRRLGGDASLNAPIRDDGEPGEWQDWLVDTSPNQEAIMAENEEFDHRRSALTGAMGVLNPRERRIFEARRLAEEPMTLEDLAAEFGVSRERVRQIEVRAFEKVQAAVKSTIARQEHAAMEAAY*