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SCNpilot_expt_1000_bf_scaffold_1153_curated

Search features with annotation key words

Displaying items 1-30 of 166 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1153_curated_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1324
DNA (1323bp) protein (441aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Phosphoglycerate dehydrogenase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PAR6_9BRAD
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EKS35448.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1586..2878
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEP4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36818.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2772..3017)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TX67_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CEG06845.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_4
unknown

Not on your lists

comp(3078..3209)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3527..4519)
DNA (993bp) protein (331aa)
ABC transporter substrate-binding protein n=1 Tax=Afipia birgiae RepID=UPI00030C6C52
Uncharacterized protein {ECO:0000313|EMBL:EKS36816.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4667..5608)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB45_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36815.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6078..7370
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P209_9BRAD
SCNpilot_expt_1000_bf_scaffold_1153_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7457..9022
DNA (1566bp) protein (522aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2N0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36812.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_9
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9027..9653
DNA (627bp) protein (209aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCI1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36058.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9679..9897)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030DC2D4
Uncharacterized protein {ECO:0000313|EMBL:EKS36810.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10523..11497
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E31606
Uncharacterized protein {ECO:0000313|EMBL:EKS36808.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11885..12640)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218V1_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:CDX33698.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_13
unknown

Not on your lists

comp(12633..13397)
DNA (765bp) protein (255aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13747..14076
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCH6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36053.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14370..15269)
DNA (900bp) protein (300aa)
RNA polymerase sigma 70 n=1 Tax=Afipia birgiae RepID=UPI0003825AE6
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpoH; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
SCNpilot_expt_1000_bf_scaffold_1153_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15489..16568)
DNA (1080bp) protein (360aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7S8_9BRAD
SCNpilot_expt_1000_bf_scaffold_1153_curated_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16704..17438)
DNA (735bp) protein (245aa)
group 1 glycosyl transferase; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7T5_9BRAD
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFI51295.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18098..19414
DNA (1317bp) protein (439aa)
O-antigen polymerase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219N3_RHOPB
O-antigen polymerase
O-antigen polymerase {ECO:0000313|EMBL:ABD86903.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19527..19859
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D82046
Uncharacterized protein {ECO:0000313|EMBL:EKS36050.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_20
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20194..21018)
DNA (825bp) protein (275aa)
UPI0003D0692A related cluster n=1 Tax=unknown RepID=UPI0003D0692A
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_expt_1000_bf_scaffold_1153_curated_21
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21302..22021
DNA (720bp) protein (240aa)
hypothetical protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
SCNpilot_expt_1000_bf_scaffold_1153_curated_22
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22054..23157
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7XUB1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMS32087.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_23
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23158..24537)
DNA (1380bp) protein (460aa)
UPI0003CDFE79 related cluster n=1 Tax=unknown RepID=UPI0003CDFE79
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESW79722.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
ABC transporter; K09691 lipopolysaccharide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_24
Mesorhizobium sp. L103C131B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24527..25294)
DNA (768bp) protein (256aa)
Sugar ABC transporter permease n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HL62_9RHIZ
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1287089 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C131B0.;"
ABC transporter permease; K09690 lipopolysaccharide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_25
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(25360..26289)
DNA (930bp) protein (310aa)
Alr4488 protein n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YNS3_NOSS1
hypothetical protein
Alr4488 protein {ECO:0000313|EMBL:BAB76187.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_26
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(26301..27560)
DNA (1260bp) protein (420aa)
Alr4488 protein n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YNS3_NOSS1
hypothetical protein rbh
Alr4488 protein {ECO:0000313|EMBL:BAB76187.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_27
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(27557..28351)
DNA (795bp) protein (265aa)
Alr4487 protein n=1 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Q8YNS4_NOSS1
hypothetical protein
Alr4487 protein {ECO:0000313|EMBL:BAB76186.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_28
unknown

Not on your lists

29404..29625
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_29
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30633..31706
DNA (1074bp) protein (358aa)
similar to dTDP-D-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=2 Tax=cellular organisms RepID=C9Y8A1_9BURK
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_1153_curated_30
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31681..32583
DNA (903bp) protein (301aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W3G4_ACISJ
Displaying items 1-30 of 166 in total

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