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SCNpilot_expt_1000_bf_scaffold_1153_curated

Search features with annotation key words

Displaying items 91-120 of 166 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1153_curated_91
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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98386..99483
DNA (1098bp) protein (366aa)
A/G-specific adenine glycosylase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PS88_9BRAD
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EKS41208.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
A/G-specific DNA-adenine glycosylase
SCNpilot_expt_1000_bf_scaffold_1153_curated_92
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99539..100180)
DNA (642bp) protein (214aa)
acyl-CoA desaturase; K00507 stearoyl-CoA desaturase (delta-9 desaturase) [EC:1.14.19.1] rbh
Fatty-acid desaturase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2Q9I7_9BRAD
Fatty-acid desaturase {ECO:0000313|EMBL:EIG56443.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_93
unknown

Not on your lists

100251..100388
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_94
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100764..101234
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQ20_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05829.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_95
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101252..101554)
DNA (303bp) protein (101aa)
FAD-dependent oxidoreductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJK0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32860.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative FAD-dependent monooxygenase
SCNpilot_expt_1000_bf_scaffold_1153_curated_96
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101496..102539)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZM0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32860.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1153_curated_97
unknown

Not on your lists

comp(102682..102807)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_98
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103167..104300)
DNA (1134bp) protein (378aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
DNA methylase N-4/N-6; K13581 modification methylase [EC:2.1.1.72]
modification methylase n=1 Tax=Afipia birgiae RepID=UPI00035C78CE
SCNpilot_expt_1000_bf_scaffold_1153_curated_99
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104689..105636
DNA (948bp) protein (316aa)
Zinc metalloprotease superfamily protein n=2 Tax=Bradyrhizobiaceae RepID=F7QJK5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32864.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
zinc metallopeptidase; K07054
SCNpilot_expt_1000_bf_scaffold_1153_curated_100
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

106051..106305
DNA (255bp) protein (85aa)
molybdopterin biosynthesis protein B n=1 Tax=Afipia birgiae RepID=UPI0003748FE5
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
moaB; molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B
SCNpilot_expt_1000_bf_scaffold_1153_curated_101
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106464..107405)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031EE88D
Acetyltransferase {ECO:0000313|EMBL:EGP08734.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_1153_curated_102
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(107479..108051)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNZ2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41220.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
glycosyl transferase family protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_103
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108237..109409
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P375_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32868.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_104
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109537..110313
DNA (777bp) protein (259aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4]
Ribonuclease HII n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSA7_9BRAD
SCNpilot_expt_1000_bf_scaffold_1153_curated_105
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

110385..111905
DNA (1521bp) protein (507aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EDE22A
Uncharacterized protein {ECO:0000313|EMBL:EKS41224.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_106
unknown

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112238..113056
DNA (819bp) protein (273aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_107
unknown

Not on your lists

113314..113412
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_108
unknown

Not on your lists

113416..113664
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_109
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113738..114439)
DNA (702bp) protein (234aa)
Permease n=2 Tax=Bradyrhizobiaceae RepID=F7QJL6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32872.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative permease of the major facilitator superfamily (MFS) family
SCNpilot_expt_1000_bf_scaffold_1153_curated_110
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114566..115366)
DNA (801bp) protein (267aa)
uracil-DNA glycosylase, family 4; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Uracil-DNA glycosylase, family 4 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSB3_9BRAD
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EKS41228.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_111
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115497..117158
DNA (1662bp) protein (554aa)
electrotransfer ubiquinone oxidoreductase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] rbh
electron transfer flavoprotein-ubiquinone oxidoreductase n=1 Tax=Afipia birgiae RepID=UPI000311E62F
Uncharacterized protein {ECO:0000313|EMBL:EKS41229.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_112
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117327..119120
DNA (1794bp) protein (598aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PP11_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41230.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_113
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119325..120209
DNA (885bp) protein (295aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NUQ6_9BRAD
SCNpilot_expt_1000_bf_scaffold_1153_curated_114
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120338..121348)
DNA (1011bp) protein (337aa)
farnesyltranstransferase (EC:2.5.1.29); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF44_9BRAD">RepID=K8PF44_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41232.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1153_curated_115
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121563..121790
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P383_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08615.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_116
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121783..122562
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKG8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41234.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
methyltransferase small rbh
SCNpilot_expt_1000_bf_scaffold_1153_curated_117
unknown

Not on your lists

comp(122598..122696)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1153_curated_118
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122943..123830
DNA (888bp) protein (296aa)
Signal peptide peptidase SppA, 36K type n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIA5_9BRAD
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:EKS41236.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidase S49
SCNpilot_expt_1000_bf_scaffold_1153_curated_119
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123847..124032
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF58_9BRAD">RepID=K8PF58_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41237.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1153_curated_120
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124547..125479
DNA (933bp) protein (311aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
Glycine--tRNA ligase alpha subunit n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QJM6_9BRAD
Displaying items 91-120 of 166 in total

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