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SCNpilot_expt_1000_bf_scaffold_1153_curated_159

Organism: scnpilot_dereplicated_Afipia_2

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 1 ASCG 11 / 38
Location: comp(167981..170767)

Top 3 Functional Annotations

Value Algorithm Source
ligD; ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 916.0
  • Bit_score: 1335
  • Evalue 0.0
DNA ligase D n=1 Tax=Afipia broomeae ATCC 49717 PF92_9BRAD">RepID=K8PF92_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 79.0
  • Coverage: 910.0
  • Bit_score: 1450
  • Evalue 0.0
DNA ligase D {ECO:0000313|EMBL:EKS41282.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 910.0
  • Bit_score: 1450
  • Evalue 0.0

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2787
ATGCCGGGTTTTCGTTCCTGGGGCGTGGCCCCGTGCGTTCGCGTGATGGGATGTCCCGTGGCCCTCAAAAGTCTCAAAACCTACCGGACGAAGCGTGATTTCACCAAGACCGCCGAGCCCAGCGGCAACGTCTCCGTGAAGAGGTCGAAGGTCCGGCGCTTCGTGATCCAGAAGCACGATGCTACCCGCCTGCACTACGACCTGCGTCTCGAATATGGCGGCGTTTTCAAGTCATGGGCCGTGACGCGCGGTCCTTCTCTCGATCCTAAGGACAAGCGCCTCGCGGTCGAAGTCGAGGATCACCCGCTCGACTATGGCGACTTTGAAGGCACGATCCCGAAAGGCCAGTATGGCGGCGGCACTGTGATGGTCTGGGATCGCGGCTACTGGCTCTCGGACGATCCCGAGCAGGGCTTCAAGAAAGGCGACCTCAAATTCGCGCTGGAAGGCGAGAAGCTGCACGGCGAATGGGTGCTGGTGCGGATGAAAAACGACCGCACCGGCGGCAAGCGCCTCAACTGGCTTCTGATCAAGCACCGCGACGATTATGCGCGTGAAGGGAAAAAGAACACGATCCTCGACGAGGATACGTCGGCGGCATCGGGACGCACGATGGAGCAGATCGCCGAGGGCAAGGGACGTGCGCCGAAGCCGTTCATGCTGGGGGCGTCGACCCGCGCCAAGGCCGCGCAGGTCTGGGATTCCAACAAAGGCCTCGCAGCCGACGAACGCGAGAAGACAACAACAAGAAAACCCGCGGCAAAAAAGACTGTTGCCAAACAACCTACAAGAAAGGCCAGCGTCGCGCGGCTGCGGACAAAAGCCGCAACCAAAAGCGCGGCGGTCAAAGGCGGCAAGCGCGCAGCGGCCCTGCCCGATTTCATTCCGCCGCAACTCTGTACCTCGGTCGAGCGGCCACCGGCCGGCGATGGCTGGGTGCACGAAATCAAATTCGACGGCTATCGCATCCAGATGCGGATTGAAGACGGCGACGTCTCGCTGAAAACCCGCAAGGGTCTCGACTGGACGGACAAGTTCTCGGCAATTGCAAAAGAAGCCGCGAAGCTTCCCGACGCCATCATCGACGGCGAGATCGTGGCGCTCGATCATAACGGTCATCCCGATTTCGCGTCGATGCAAGCCGCACTGTCCGACGGCAAGACCGACGACCTGATCTTCTACGCCTTCGATCTGCTGTTCGCGGATGACGAGGATTTGCGGAAGCTTCCGTTGACCGAGCGCAAGGCACGGCTCCATGCTCTGCTCAACGGCAAGCGCAAGCGTGACGAAGGCGTCATTCGTTACGTCGAACACTTCGAGACCGGCGGCGATGCGATTTTGCAATCGGCCTGCAAGCTCTCGCTCGAAGGCATCGTCTCCAAGAAGGCGTCCGCGCCGTATCACTCGGGCCGCTCTGACAGTTGGACCAAGGCGAAGTGCCGCGCCGGACATGAAGTCGTGATCGGTGGCTGGAAGACCACCGGCGGAAAATTCCGCTCGCTGATGGTGGGCGTTCCGCGCGGCGATCATCTCGCCTATGTCGGCGTGGTCGGCACTGGCTACGGACAGGCTGTCGTGAAGCGCATCATGCCCGAACTCAAGACCGTGGCCGCGAGTGACAGCCCGTTCGGCGGCAAGAACGTGCCGAAGAAAACCTCCGATATGCACTGGGTGAAACCGGAGCTGGTCGCGGAGATCGAATTCGCCGGCTTCACCGGCGACGGCATGGTGCGTCAGGCCGCGTTCAAAGGACTGCGCAAGGACAAACCGGCCAGCGAAGTGACGACGGATGAGCCGGTGAAAACCGAGATAGCAGAGCCGTCCGCGAAATCGTCCGGCAAGCCGAAAGCCAAAACAGCCGCAGCGAAATCTTCCGCGACAAGCGGGACAGCGACTGTGATGGGCGTTGTCATCTCCAAGCCGGACAAGGCGATGTGGCCTGACGGCGGCGACGGCAAGCCGGTGACCAAGCTCGATCTCGCGCAATACATGGAAGAGGTCGGCGACTGGCTGATTGAACACATCAAAGGCCGCCCCTGCTCGATCATCCGCGCGCCGGATGGAATCGATGGCGAAAAGTTCTTTCAGCGCCATGCCATGACCGGCATGTCGAACCTGATCGGACTTGTGCGCGTGTCAGGCGATCGCAAACCGTATGTCCAGATCGATCGTGTCGAGGGCCTCGCCGCCGCCGCGCAGATCGGCGGTCTCGAACTGCATCCGTGGAATTGCGCACCGGACGAACCCGATGTGCCGGGGCGGCTGGTGTTCGATCTCGATCCTTCGCCCGATGTCGCGTTCAGCGCAGTTGTGGACGCCGCGCGCGAGATGCGCGACCGCCTCACCGCGCTCGGACTTGAAAGTTTCTGCAAGACCACCGGTGGCAAGGGCCTTCATGTGGTCTCGCCGCTGAAGGATGCGAAGAAAGACAGGATCGACTGGAAGACCGCGAAAGCCTTCGCACAAGGCGTGTGCCAGCAGATGGCCGCCGACAGCCCGGAGCTTTATCTGCTCAACATGTCCAAGAAGCAGCGGCAGGGAAAGATCTTCCTCGACTATCTGCGCAACGACCGGATGGCGACCGCGGTCGCACCGCTCTCGCCGCGTGCGCGGCCGGGCGCGACGGTCTCGATGCCGCTGACATGGACGCAGGTGCGCAGCGATCTCGATCCGAAAAAATATACGCTGCGGACGACGCCGGCGTTGATCGCAAAGAGCAAGGCCTGGGCCGATTATGACAGCGCCGCGCGATCGATCAAATCAGCGATCGCAAAGCTGGCGAAGTAA
PROTEIN sequence
Length: 929
MPGFRSWGVAPCVRVMGCPVALKSLKTYRTKRDFTKTAEPSGNVSVKRSKVRRFVIQKHDATRLHYDLRLEYGGVFKSWAVTRGPSLDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMVWDRGYWLSDDPEQGFKKGDLKFALEGEKLHGEWVLVRMKNDRTGGKRLNWLLIKHRDDYAREGKKNTILDEDTSAASGRTMEQIAEGKGRAPKPFMLGASTRAKAAQVWDSNKGLAADEREKTTTRKPAAKKTVAKQPTRKASVARLRTKAATKSAAVKGGKRAAALPDFIPPQLCTSVERPPAGDGWVHEIKFDGYRIQMRIEDGDVSLKTRKGLDWTDKFSAIAKEAAKLPDAIIDGEIVALDHNGHPDFASMQAALSDGKTDDLIFYAFDLLFADDEDLRKLPLTERKARLHALLNGKRKRDEGVIRYVEHFETGGDAILQSACKLSLEGIVSKKASAPYHSGRSDSWTKAKCRAGHEVVIGGWKTTGGKFRSLMVGVPRGDHLAYVGVVGTGYGQAVVKRIMPELKTVAASDSPFGGKNVPKKTSDMHWVKPELVAEIEFAGFTGDGMVRQAAFKGLRKDKPASEVTTDEPVKTEIAEPSAKSSGKPKAKTAAAKSSATSGTATVMGVVISKPDKAMWPDGGDGKPVTKLDLAQYMEEVGDWLIEHIKGRPCSIIRAPDGIDGEKFFQRHAMTGMSNLIGLVRVSGDRKPYVQIDRVEGLAAAAQIGGLELHPWNCAPDEPDVPGRLVFDLDPSPDVAFSAVVDAAREMRDRLTALGLESFCKTTGGKGLHVVSPLKDAKKDRIDWKTAKAFAQGVCQQMAADSPELYLLNMSKKQRQGKIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVRSDLDPKKYTLRTTPALIAKSKAWADYDSAARSIKSAIAKLAK*