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SCNpilot_expt_1000_bf_scaffold_459_curated

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Displaying items 1-30 of 213 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_459_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..561)
DNA (561bp) protein (187aa)
atpH; ATP synthase subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
ATP synthase subunit delta n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P882_9BRAD
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_459_curated_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1250..1690
DNA (441bp) protein (147aa)
Rare lipoprotein A family protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BJ80_OLICM
rare lipoprotein A family protein; K03642 rare lipoprotein A
Rare lipoprotein A family protein {ECO:0000313|EMBL:AEI08028.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_459_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1885..4056)
DNA (2172bp) protein (724aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
priA; primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
Primosomal protein N n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZG6_9BRAD
SCNpilot_expt_1000_bf_scaffold_459_curated_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4144..5124
DNA (981bp) protein (327aa)
Tyrosine recombinase XerC n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGK2_9BRAD
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
xerC; tyrosine recombinase XerC; K03733 integrase/recombinase XerC
SCNpilot_expt_1000_bf_scaffold_459_curated_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5250..5840
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JD00_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08032.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_459_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5988..6518)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031B58BB
Uncharacterized protein {ECO:0000313|EMBL:EKS34604.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_459_curated_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6893..8293)
DNA (1401bp) protein (467aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
lpdA; dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAX9_9BRAD
SCNpilot_expt_1000_bf_scaffold_459_curated_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8455..9699)
DNA (1245bp) protein (415aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
sucB; dihydrolipoamide succinyltransferase (EC:2.3.1.61); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNG5_AFIFE
SCNpilot_expt_1000_bf_scaffold_459_curated_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9773..12724)
DNA (2952bp) protein (984aa)
sucA; 2-oxoglutarate dehydrogenase componentSucA (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
2-oxoglutarate dehydrogenase componentSucA {ECO:0000313|EMBL:AEI08036.1}; EC=1.2.4.2 {ECO:0000313|EMBL:AEI08036.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
MFS transporter n=1 Tax=Afipia birgiae RepID=UPI0002F6A2D0
SCNpilot_expt_1000_bf_scaffold_459_curated_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13005..13973)
DNA (969bp) protein (323aa)
mdh; malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37]
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Malate dehydrogenase n=3 Tax=Oligotropha carboxidovorans RepID=F8BJ89_OLICM
SCNpilot_expt_1000_bf_scaffold_459_curated_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14274..15452)
DNA (1179bp) protein (393aa)
AFG1-family ATPase n=2 Tax=Oligotropha carboxidovorans RepID=B6JCZ4_OLICO
AFG1 family ATPase; K06916
ATPase, AFG1-like protein {ECO:0000313|EMBL:AEI08038.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_459_curated_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15522..16058)
DNA (537bp) protein (179aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
2'-5' RNA ligase n=2 Tax=Bradyrhizobiaceae RepID=F7QGL4_9BRAD
SCNpilot_expt_1000_bf_scaffold_459_curated_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16198..16824)
DNA (627bp) protein (209aa)
Arylesterase {ECO:0000313|EMBL:EGP09660.1}; EC=3.1.1.2 {ECO:0000313|EMBL:EGP09660.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
lipolytic protein; K01076 [EC:3.1.2.-]
acyl-CoA thioesterase n=1 Tax=Afipia birgiae RepID=UPI0002D2ECF4
SCNpilot_expt_1000_bf_scaffold_459_curated_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16862..17689
DNA (828bp) protein (276aa)
ABC transporter ATP-binding protein YvcR n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGL6_9BRAD
ABC transporter ATP-binding protein YvcR {ECO:0000313|EMBL:EGP09661.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_459_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17686..20244
DNA (2559bp) protein (853aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NW96_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34617.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_459_curated_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20452..21246
DNA (795bp) protein (265aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI000381643D
Membrane protein {ECO:0000313|EMBL:EGP09663.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inhibitor of apoptosis-promoting Bax1-like protein; K06890
SCNpilot_expt_1000_bf_scaffold_459_curated_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21632..22171
DNA (540bp) protein (180aa)
pat; phosphinothricin N-acetyltransferase Pat (EC:2.3.1.183); K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNH4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29969.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_459_curated_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22260..22559)
DNA (300bp) protein (100aa)
Transcriptional regulator, ArsR family protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WAC9_9CAUL
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CDN55036.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
regulatory , arsR family protein
SCNpilot_expt_1000_bf_scaffold_459_curated_19
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22628..22972
DNA (345bp) protein (115aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
Alkylhydroperoxidase AhpD family core domain-containing protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BNP9_9RHIZ
alkylhydroperoxidase AhpD family core domain-containing protein
SCNpilot_expt_1000_bf_scaffold_459_curated_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22977..23324)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAW8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI50045.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_459_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23950..24777)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZI9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34621.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_459_curated_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24905..27625)
DNA (2721bp) protein (907aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
aconitate hydratase; K01681 aconitate hydratase 1 [EC:4.2.1.3]
aconitate hydratase n=1 Tax=Afipia birgiae RepID=UPI0002FE9A19
SCNpilot_expt_1000_bf_scaffold_459_curated_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27851..28453
DNA (603bp) protein (201aa)
cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000255|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000255|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000255|HAMAP-Rule:MF_01707}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Cytochrome c biogenesis ATP-binding export protein CcmA n=2 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=CCMA_RHOPB
SCNpilot_expt_1000_bf_scaffold_459_curated_24
unknown

Not on your lists

comp(28480..28605)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_459_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28656..29324
DNA (669bp) protein (223aa)
Heme exporter protein B n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1L8_9BRAD
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
heme exporter protein CcmB; K02194 heme exporter protein B
SCNpilot_expt_1000_bf_scaffold_459_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29442..30173
DNA (732bp) protein (244aa)
Heme exporter protein C n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4N1_9BRAD
Heme exporter protein C {ECO:0000313|EMBL:EKS34625.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cycZ; heme exporter protein C; K02195 heme exporter protein C
SCNpilot_expt_1000_bf_scaffold_459_curated_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30178..30369
DNA (192bp) protein (64aa)
Heme exporter protein CcmD n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZJ7_9BRAD
Heme exporter protein CcmD {ECO:0000313|EMBL:EKS34626.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Heme exporter protein CcmD
SCNpilot_expt_1000_bf_scaffold_459_curated_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30366..30956
DNA (591bp) protein (197aa)
Thiol:disulfide interchange protein CycY n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXC6_9BRAD
Thiol:disulfide interchange protein CycY {ECO:0000313|EMBL:EKS33811.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
cycY; thiol:disulfide interchange protein CycY; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
SCNpilot_expt_1000_bf_scaffold_459_curated_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31097..31465
DNA (369bp) protein (123aa)
DNA-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002FBB8A6
Uncharacterized protein {ECO:0000313|EMBL:EKS33812.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_459_curated_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31529..32140)
DNA (612bp) protein (204aa)
Probable intracellular septation protein A n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSC9_AFIFE
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ispZ; intracellular septation protein A; K06190 intracellular septation protein
Displaying items 1-30 of 213 in total

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