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SCNpilot_expt_1000_bf_scaffold_1914_curated_18

Organism: scnpilot_dereplicated_Afipia_1

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(15757..16026)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L27 n=1 Tax=Afipia birgiae RepID=UPI0003143973 similarity UNIREF
DB: UNIREF100
  • Identity: 94.4
  • Coverage: 89.0
  • Bit_score: 178
  • Evalue 2.30e-42
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.5
  • Coverage: 89.0
  • Bit_score: 178
  • Evalue 4.30e-42
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 similarity KEGG
DB: KEGG
  • Identity: 93.3
  • Coverage: 89.0
  • Bit_score: 175
  • Evalue 8.10e-42

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 270
ATGGCTCATAAGAAAGCAGGCGGTTCATCGCGCAACGGACGCGACTCGGCTGGCAAGCGCCTTGGAATCAAGGCGTTCGGCGGCGAGCACGTGATTCCGGGCAACATCATCGCGCGTCAGCGCGGCACCACCTGGCACCCCGGCCTTAACGTCGGCATGGGCACGGACCACACGCTGTTCGCCAAGATCGAAGGCCATGTTGAATTCCGCGCCAAAGCCAACGGCCGCACGTTCGTATCGGTTGTTCCGATGGCGGCCGCGGCCGAATAA
PROTEIN sequence
Length: 90
MAHKKAGGSSRNGRDSAGKRLGIKAFGGEHVIPGNIIARQRGTTWHPGLNVGMGTDHTLFAKIEGHVEFRAKANGRTFVSVVPMAAAAE*