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SCNpilot_expt_1000_bf_scaffold_1914_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1914_curated_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..331
DNA (330bp) protein (110aa)
F0F1 ATP synthase subunit alpha; K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
ATP synthase subunit alpha n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=ATPA_RHOP2
SCNpilot_expt_1000_bf_scaffold_1914_curated_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

479..1357
DNA (879bp) protein (293aa)
atpG; F0F1 ATP synthase subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
ATP synthase gamma chain n=2 Tax=Bradyrhizobiaceae RepID=F7QGJ7_9BRAD
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_1914_curated_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1368..1772
DNA (405bp) protein (135aa)
Peroxiredoxin, Ohr subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAY7_9BRAD
Peroxiredoxin, Ohr subfamily {ECO:0000313|EMBL:EFI50064.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
OsmC-like protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1794..3224
DNA (1431bp) protein (477aa)
atpD; F0F1 ATP synthase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
ATP synthase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
ATP synthase subunit beta n=2 Tax=Oligotropha carboxidovorans RepID=ATPB_OLICO rbh
SCNpilot_expt_1000_bf_scaffold_1914_curated_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3360..3770
DNA (411bp) protein (137aa)
atpC; ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=2 Tax=Oligotropha carboxidovorans RepID=ATPE_OLICO
ATP synthase epsilon chain {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1914_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4358..4858)
DNA (501bp) protein (167aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dinucleoside polyphosphate hydrolase (EC:3.6.1.-); K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
RNA pyrophosphohydrolase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLE9_AFIFE
SCNpilot_expt_1000_bf_scaffold_1914_curated_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4916..5677)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAZ1_9BRAD
Divergent polysaccharide deacetylase {ECO:0000313|EMBL:CEG09746.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein; K09798 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6155..6709)
DNA (555bp) protein (185aa)
maltose O-acetyltransferase Maa (EC:2.3.1.79); K00661 maltose O-acetyltransferase [EC:2.3.1.79]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNF3_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29944.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_1914_curated_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6790..8136)
DNA (1347bp) protein (449aa)
Carboxyl-terminal protease {ECO:0000313|EMBL:EGP09637.1}; EC=3.4.21.102 {ECO:0000313|EMBL:EGP09637.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ctpA; carboxy-terminal-processing protease CtpA (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Carboxyl-terminal protease n=2 Tax=Bradyrhizobiaceae RepID=F7QH31_9BRAD
SCNpilot_expt_1000_bf_scaffold_1914_curated_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8157..9464)
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NX96_9BRAD
Peptidase M23B {ECO:0000313|EMBL:EGP09636.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
metallopeptidase
SCNpilot_expt_1000_bf_scaffold_1914_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9467..9949)
DNA (483bp) protein (161aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC
rRNA large subunit methyltransferase; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1H1_9BRAD
SCNpilot_expt_1000_bf_scaffold_1914_curated_12
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10125..10481)
DNA (357bp) protein (119aa)
Ribosomal silencing factor RsfS n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAZ6_9BRAD
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Iojap protein-like protein; K09710 ribosome-associated protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10677..11303)
DNA (627bp) protein (209aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NW68_9BRAD
SCNpilot_expt_1000_bf_scaffold_1914_curated_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11300..12592)
DNA (1293bp) protein (431aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
Gamma-glutamyl phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000255|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha c
Gamma-glutamyl phosphate reductase n=2 Tax=Oligotropha carboxidovorans RepID=PROA_OLICO rbh
SCNpilot_expt_1000_bf_scaffold_1914_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12695..13840)
DNA (1146bp) protein (382aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00057535}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11]
Glutamate 5-kinase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NX92_9BRAD
SCNpilot_expt_1000_bf_scaffold_1914_curated_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13878..14951)
DNA (1074bp) protein (358aa)
GTPase Obg n=1 Tax=Afipia felis ATCC 53690 RepID=K8NUN1_AFIFE
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
obgE; GTPase ObgE; K03979 GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15027..15620)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHV4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29932.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15757..16026)
DNA (270bp) protein (90aa)
50S ribosomal protein L27 n=1 Tax=Afipia birgiae RepID=UPI0003143973
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
SCNpilot_expt_1000_bf_scaffold_1914_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16083..16571)
DNA (489bp) protein (163aa)
50S ribosomal protein L21 n=1 Tax=Afipia birgiae RepID=UPI000307A760
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SCNpilot_expt_1000_bf_scaffold_1914_curated_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16852..18063
DNA (1212bp) protein (404aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NZ87_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09624.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_21
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18217..19377)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A92A5
Uncharacterized protein {ECO:0000313|EMBL:CCE09630.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_22
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19514..20518
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370A484
AraC type helix-turn-helix
AraC type helix-turn-helix {ECO:0000313|EMBL:CAD84633.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_1914_curated_23
unknown

Not on your lists

20558..20758
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1914_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21259..21993)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EE17D5
Uncharacterized protein {ECO:0000313|EMBL:EKS41334.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1914_curated_25
unknown

Not on your lists

comp(22130..22783)
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1914_curated_26
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22810..23181)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UL67_ANASK
Uncharacterized protein {ECO:0000313|EMBL:GAO03820.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_27
unknown

Not on your lists

comp(23178..23351)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1914_curated_28
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23815..25305)
DNA (1491bp) protein (497aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ18004.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
SCNpilot_expt_1000_bf_scaffold_1914_curated_29
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25546..27999
DNA (2454bp) protein (818aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036F6ED4
Uncharacterized protein {ECO:0000313|EMBL:AJD41688.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1914_curated_30
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28028..28264)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KM58_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB45750.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Displaying items 1-30 of 38 in total

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