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SCNpilot_expt_300_bf_scaffold_510_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_510_curated_1
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33..455
DNA (423bp) protein (141aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BDL3_RALP1
SCNpilot_expt_300_bf_scaffold_510_curated_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

433..1170
DNA (738bp) protein (246aa)
NADPH-dependent FMN reductase n=3 Tax=Pseudomonas aeruginosa RepID=B3G203_PSEAI
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ACD39065.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
arsenical resistance protein ArsH; K11811 arsenical resistance protein ArsH
SCNpilot_expt_300_bf_scaffold_510_curated_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1212..1721)
DNA (510bp) protein (170aa)
DNA repair protein RadC n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WGS8_DELAC
DNA repair protein RadC {ECO:0000313|EMBL:EPD37380.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
DNA repair protein Radc; K03630 DNA repair protein RadC
SCNpilot_expt_300_bf_scaffold_510_curated_4
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2176..3432
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KK67_STEMA
Uncharacterized protein {ECO:0000313|EMBL:BAP44806.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_510_curated_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3429..5174
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KK66_STEMA
hypothetical protein; K06915
Uncharacterized protein {ECO:0000313|EMBL:CCH11455.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
SCNpilot_expt_300_bf_scaffold_510_curated_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5227..5529)
DNA (303bp) protein (101aa)
DNA-binding protein n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4USN9_RALSL
DNA-binding protein {ECO:0000313|EMBL:KIL05682.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
DNA-binding protein
SCNpilot_expt_300_bf_scaffold_510_curated_7
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5513..5896)
DNA (384bp) protein (128aa)
Uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=I1YGP4_METFJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ02087.1}; TaxID=754477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7).;"
SCNpilot_expt_300_bf_scaffold_510_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6036..7238)
DNA (1203bp) protein (401aa)
Phage integrase family protein n=7 Tax=Proteobacteria RepID=A1W957_ACISJ
int; integrase family protein
Integrase family protein {ECO:0000313|EMBL:AEB84011.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_510_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7487..8116
DNA (630bp) protein (210aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW0_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84012.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_510_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8241..10199
DNA (1959bp) protein (653aa)
UvrABC system protein C n=2 Tax=Alicycliphilus denitrificans RepID=E8TVV9_ALIDB
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
SCNpilot_expt_300_bf_scaffold_510_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10229..10816
DNA (588bp) protein (196aa)
cdp-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AEB84014.1}; EC=2.7.8.5 {ECO:0000313|EMBL:AEB84014.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVV8_ALIDB
SCNpilot_expt_300_bf_scaffold_510_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11162..11434
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVV7_ALIDB
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone family protein DNA-binding protein {ECO:0000313|EMBL:GAO21969.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_510_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11584..13506
DNA (1923bp) protein (641aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVV6_ALIDB
SCNpilot_expt_300_bf_scaffold_510_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13869..15227
DNA (1359bp) protein (453aa)
Integrase family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTT5_ALIDB
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ADU98038.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_510_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15294..15638
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6BIJ7_PSEST
Addiction module killer protein {ECO:0000313|EMBL:GAO24004.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_510_curated_16
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15646..15936
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa JJ692 RepID=U9Q0A9_PSEAI
Transcriptional regulator {ECO:0000313|EMBL:BAP44804.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
transcriptional regulator
SCNpilot_expt_300_bf_scaffold_510_curated_17
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16205..16423
DNA (219bp) protein (73aa)
DNA-binding protein n=1 Tax=Pseudomonas aeruginosa DHS01 RepID=V4ZC57_PSEAI
XRE family transcriptional regulator {ECO:0000313|EMBL:AKE71660.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
XRE family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_510_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16416..17441
DNA (1026bp) protein (342aa)
ATPase of the AAA+ class n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 RepID=D4SR50_9XANT
ATPase {ECO:0000313|EMBL:GAO21011.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
ATPase
SCNpilot_expt_300_bf_scaffold_510_curated_19
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17515..19929
DNA (2415bp) protein (805aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA026 RepID=U8N8C6_PSEAI
Serine protease {ECO:0000313|EMBL:BAQ41852.1}; Uncharacterized protein {ECO:0000313|EMBL:AKE71662.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_510_curated_20
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20254..20763
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI00030E0CA3
DNA repair protein RadC {ECO:0000313|EMBL:KGA42483.1}; TaxID=78398 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. odoriferum.;"
DNA repair protein Radc; K03630 DNA repair protein RadC
SCNpilot_expt_300_bf_scaffold_510_curated_21
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20883..21305)
DNA (423bp) protein (141aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
ArsC1 protein n=1 Tax=Ralstonia sp. PBA RepID=I9BTA8_9RALS
Displaying 21 items

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