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SCNpilot_expt_300_bf_scaffold_250_curated

Search features with annotation key words

Displaying items 31-60 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_250_curated_31
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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33543..33971
DNA (429bp) protein (143aa)
Hemerythrin HHE cation binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS75_ALIDB
Hemerythrin HHE cation binding domain-containing protein
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:ADU97913.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_32
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34256..37558
DNA (3303bp) protein (1101aa)
Diguanylate cyclase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS74_ALIDB
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADU97912.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_33
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37683..39710
DNA (2028bp) protein (676aa)
anaerobic ribonucleoside-triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2]
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS73_ALIDB
Anaerobic ribonucleoside triphosphate reductase {ECO:0000313|EMBL:GAO25839.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_34
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39793..39993
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS72_ALIDB
hypothetical protein
Anaerobic ribonucleoside triphosphate reductase {ECO:0000313|EMBL:GAO25838.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_35
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39971..40651
DNA (681bp) protein (227aa)
anaerobic ribonucleoside-triphosphate reductase activating protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4]
Anaerobic ribonucleoside-triphosphate reductase activating protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS71_ALIDB
Anaerobic ribonucleoside-triphosphate reductase activating protein {ECO:0000313|EMBL:ADU97909.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_36
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40922..42784)
DNA (1863bp) protein (621aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=2 Tax=Alicycliphilus denitrificans RepID=E8TS70_ALIDB
ATP-dependent DNA helicase protein {ECO:0000313|EMBL:GAO25836.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_37
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43047..44012
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS69_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU97907.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_38
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44185..44568
DNA (384bp) protein (128aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS68_ALIDB
cupin 2 conserved barrel domain protein
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADU97906.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_39
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44565..45728
DNA (1164bp) protein (388aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEB82548.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEB82548.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Butyryl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCU5_ALIDK
SCNpilot_expt_300_bf_scaffold_250_curated_40
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45811..46710
DNA (900bp) protein (300aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS66_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADU97904.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_41
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46707..47738
DNA (1032bp) protein (344aa)
homocysteine s-methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
Methionine synthase {ECO:0000313|EMBL:AEB82546.1}; EC=2.1.1.13 {ECO:0000313|EMBL:AEB82546.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Methionine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCU3_ALIDK
SCNpilot_expt_300_bf_scaffold_250_curated_42
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47848..50568
DNA (2721bp) protein (907aa)
magnesium-translocating P-type ATPase (EC:3.6.3.2); K01531 Mg2+-importing ATPase [EC:3.6.3.2]
Magnesium-translocating P-type ATPase {ECO:0000313|EMBL:AEB82545.1}; EC=3.6.3.2 {ECO:0000313|EMBL:AEB82545.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Magnesium-translocating P-type ATPase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCU2_ALIDK
SCNpilot_expt_300_bf_scaffold_250_curated_43
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50624..52285
DNA (1662bp) protein (554aa)
Acyl-CoA dehydrogenase domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS63_ALIDB
acyl-CoA dehydrogenase domain-containing protein; K09456 putative acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:AEB82544.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_44
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52590..52847
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BZK9_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX35917.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_300_bf_scaffold_250_curated_45
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52851..54533
DNA (1683bp) protein (561aa)
peptidase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000375EEDD
Uncharacterized protein {ECO:0000313|EMBL:GAD23461.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_250_curated_46
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54530..54880
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035DE718
Uncharacterized protein {ECO:0000313|EMBL:GAD23462.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_250_curated_47
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54943..55458
DNA (516bp) protein (172aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J627_COMT2
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000313|EMBL:KGH29440.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_expt_300_bf_scaffold_250_curated_48
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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55455..56390
DNA (936bp) protein (312aa)
FecR n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XZ34_9RHOO
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:EZP53784.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
FecR; K07165 transmembrane sensor
SCNpilot_expt_300_bf_scaffold_250_curated_49
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56536..56793
DNA (258bp) protein (86aa)
Plasmid stabilization protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DTV2_THIND
parD_[H]; plasmid stabilization protein
Plasmid stabilization protein {ECO:0000313|EMBL:AGA32443.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
SCNpilot_expt_300_bf_scaffold_250_curated_50
Photorhabdus temperata, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56797..57102
DNA (306bp) protein (102aa)
Plasmid stabilization protein n=2 Tax=Photorhabdus temperata RepID=T0P156_PHOTE
Plasmid stabilization protein ParE {ECO:0000313|EMBL:ERT11169.1}; TaxID=1389415 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="Photorhabdus temperata J3.;"
putative plasmid stabilization protein
SCNpilot_expt_300_bf_scaffold_250_curated_51
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57322..59778
DNA (2457bp) protein (819aa)
TonB-dependent siderophore receptor n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AM85_DELSC
TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KFJ12337.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
TonB-dependent siderophore receptor
SCNpilot_expt_300_bf_scaffold_250_curated_52
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59892..60407
DNA (516bp) protein (172aa)
RNA polymerase sigma factor, partial n=1 Tax=Comamonas sp. B-9 RepID=UPI0003959EB7
RNA polymerase sigma factor {ECO:0000313|EMBL:KEH14324.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_300_bf_scaffold_250_curated_53
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60409..61377
DNA (969bp) protein (323aa)
Transmembrane sensor n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X1K0_DELAC
Transmembrane sensor {ECO:0000313|EMBL:EPD33899.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_expt_300_bf_scaffold_250_curated_54
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61527..64001
DNA (2475bp) protein (825aa)
TonB-dependent siderophore receptor family protein 19 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HU57_ACHXA
TonB-dependent siderophore receptor family protein 19; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor family protein 19 {ECO:0000313|EMBL:ADP18630.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_300_bf_scaffold_250_curated_55
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64085..65284
DNA (1200bp) protein (400aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8TS62_ALIDB
Threonine dehydratase {ECO:0000313|EMBL:AEB82543.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_56
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65351..65512
DNA (162bp) protein (54aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS61_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB82542.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_57
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65853..67721
DNA (1869bp) protein (623aa)
phosphoenolpyruvate carboxykinase (GTP) (EC:4.1.1.32); K01596 phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Phosphoenolpyruvate carboxykinase [GTP] n=2 Tax=Alicycliphilus denitrificans RepID=E8TS60_ALIDB
SCNpilot_expt_300_bf_scaffold_250_curated_58
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67862..68302)
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS59_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB82540.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_59
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68429..69400
DNA (972bp) protein (324aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS58_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADU97896.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_60
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69427..70272
DNA (846bp) protein (282aa)
Metallophosphoesterase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS57_ALIDB
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ADU97895.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying items 31-60 of 65 in total

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