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SCNpilot_expt_300_bf_scaffold_250_curated_47

Organism: scnpilot_dereplicated_Alicycliphilus_1

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 54943..55458

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J627_COMT2 similarity UNIREF
DB: UNIREF100
  • Identity: 73.1
  • Coverage: 156.0
  • Bit_score: 222
  • Evalue 4.60e-55
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 73.1
  • Coverage: 156.0
  • Bit_score: 222
  • Evalue 1.50e-55
RNA polymerase sigma factor {ECO:0000313|EMBL:KGH29440.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.1
  • Coverage: 158.0
  • Bit_score: 222
  • Evalue 3.80e-55

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Taxonomy

Comamonas testosteroni → Comamonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGTCATCCCCCTCCACGACCCACGCCCAGGCCACCCAGGCCCTGTACCTGCAGCACCACGGCTGGCTGCTCGCGCGCCTGCGCCGCAAGCTCGGCTGCGCGTGGGACGCGGCCGACCTCGCCCAGAGCACCTTCGTGCGCGTGCTCACGGCCACCGGCCAGCGGCTCGACGAAGTGGCCGAGCCGCGCGCCTACCTCACCACCATCGCGCGCAACCTGCTCATCAACCACGTGCGCCGCCAGGCGCTGGAGCGGGCGTGGCTCGACGCCGTGGCCCACCTGCCCGCGCCGCTGGCGCCATCGCCAGAGGAGCAGCTGCTGGTGCTCGAAGCCCTGCGCGAGATCGACGCCATGCTCGGCGGCCTGCCGCCCCGCGCGCGCGAGGCCTTCCTGCTCGCCCAGCTCGACGGGCTGACCTACGCCCAGGTGGCCGCGCGGCTCGGCGTGACCGAGCGCACCGTCAAGCGCTACATGGCCGAGGCGTTCGCCCAATGCATCCTGCTCGCGGCGCCATGA
PROTEIN sequence
Length: 172
MSSPSTTHAQATQALYLQHHGWLLARLRRKLGCAWDAADLAQSTFVRVLTATGQRLDEVAEPRAYLTTIARNLLINHVRRQALERAWLDAVAHLPAPLAPSPEEQLLVLEALREIDAMLGGLPPRAREAFLLAQLDGLTYAQVAARLGVTERTVKRYMAEAFAQCILLAAP*