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SCNpilot_expt_300_bf_scaffold_250_curated

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_250_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1089
DNA (1089bp) protein (363aa)
Acyl-CoA dehydrogenase domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS98_ALIDB
acyl-CoA dehydrogenase
Long-chain-acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAO21576.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1113..2273
DNA (1161bp) protein (387aa)
Acetyl-CoA acetyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS97_ALIDB
acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAO25863.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2275..2688
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDJ3_ALIDK
hypothetical protein; K07068
Uncharacterized protein {ECO:0000313|EMBL:AEB82576.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2696..3805)
DNA (1110bp) protein (370aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS94_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ADU97932.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3836..4615)
DNA (780bp) protein (260aa)
Regulatory protein IclR n=2 Tax=Alicycliphilus denitrificans RepID=E8TS93_ALIDB
regulatory protein iclr
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEB82574.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4753..5559)
DNA (807bp) protein (269aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TS91_ALIDB
short-chain dehydrogenase/reductase sdr
2,4-dienoyl-CoA reductase FadH {ECO:0000313|EMBL:GAO25858.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5569..6567)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS90_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU97928.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6648..7415)
DNA (768bp) protein (256aa)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase (EC:1.1.1.178)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TS89_ALIDB
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:GAO25856.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7477..8655)
DNA (1179bp) protein (393aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TS88_ALIDB
3-ketoacyl-CoA thiolase {ECO:0000313|EMBL:GAO25855.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8861..10408
DNA (1548bp) protein (516aa)
AMP-dependent synthetase and ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS87_ALIDB
AMP-dependent synthetase/ligase
AMP-dependent synthetase {ECO:0000313|EMBL:GAO25854.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_250_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10486..11628
DNA (1143bp) protein (381aa)
Long-chain-acyl-CoA dehydrogenase (EC:1.3.99.13); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Long-chain-acyl-CoA dehydrogenase {ECO:0000313|EMBL:AEB82567.1}; EC=1.3.99.13 {ECO:0000313|EMBL:AEB82567.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Long-chain-acyl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDI4_ALIDK
SCNpilot_expt_300_bf_scaffold_250_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11661..12647
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCW3_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB82566.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12687..13697
DNA (1011bp) protein (337aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS84_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB82565.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13746..14201)
DNA (456bp) protein (152aa)
Thioesterase superfamily protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS83_ALIDB
phenylacetic acid degradation-like protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ADU97921.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14214..15206)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS82_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU97920.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15224..16798)
DNA (1575bp) protein (525aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
O-succinylbenzoate--CoA ligase {ECO:0000313|EMBL:AEB82562.1}; EC=6.2.1.26 {ECO:0000313|EMBL:AEB82562.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
O-succinylbenzoate--CoA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCV9_ALIDK
SCNpilot_expt_300_bf_scaffold_250_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16803..17753)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TS80_ALIDB
Uncharacterized protein {ECO:0000313|EMBL:GAO25846.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_250_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18039..19238)
DNA (1200bp) protein (400aa)
formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase {ECO:0000313|EMBL:AEB82588.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEB82588.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Formyl-CoA transferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDK5_ALIDK
SCNpilot_expt_300_bf_scaffold_250_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19336..20340)
DNA (1005bp) protein (335aa)
LacI family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C2967
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ADU97984.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20396..21355
DNA (960bp) protein (320aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037DDE77
Transcriptional regulator {ECO:0000313|EMBL:GAD20593.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_250_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21357..22745)
DNA (1389bp) protein (463aa)
l-serine dehydratase 1 (EC:4.3.1.17); K01752 L-serine dehydratase [EC:4.3.1.17]
L-serine dehydratase 1 {ECO:0000313|EMBL:AEB82560.1}; EC=4.3.1.17 {ECO:0000313|EMBL:AEB82560.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
L-serine dehydratase 1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TS79_ALIDB
SCNpilot_expt_300_bf_scaffold_250_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22878..23552
DNA (675bp) protein (225aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TS78_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU97916.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_250_curated_23
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23533..24402)
DNA (870bp) protein (290aa)
Transcriptional regulator n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CNW0_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJN09564.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_250_curated_24
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25574..26209
DNA (636bp) protein (212aa)
Putative amino acid ABC transporter ATP-binding protein n=1 Tax=Sagittula stellata E-37 RepID=A3K4T8_9RHOB
Putative amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EBA07987.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
ectoine/hydroxyectoine ABC transporter ATP-binding protein
SCNpilot_expt_300_bf_scaffold_250_curated_25
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26238..27065
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WXE1_RHOS5
hypothetical protein; K02030 polar amino acid transport system substrate-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ABP72055.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_expt_300_bf_scaffold_250_curated_26
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27109..27762
DNA (654bp) protein (218aa)
amino acid ABC transporter permease n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F5C7
Amino acid ABC transporter permease {ECO:0000313|EMBL:KGJ19483.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_300_bf_scaffold_250_curated_27
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27759..28427
DNA (669bp) protein (223aa)
Amino acid ABC transporter protein, permease protein n=1 Tax=Sagittula stellata E-37 RepID=A3K4T5_9RHOB
Amino acid ABC transporter protein, permease protein {ECO:0000313|EMBL:EBA07984.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_300_bf_scaffold_250_curated_28
Thermus oshimai, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

28439..29401
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Thermus oshimai JL-2 RepID=K7R853_THEOS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV77219.1}; Flags: Precursor;; TaxID=751945 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus oshimai JL-2.;"
SCNpilot_expt_300_bf_scaffold_250_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29411..31012)
DNA (1602bp) protein (534aa)
Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GCV5_ALIDK
Fis family sigma54 specific transcriptional regulator; K12266 anaerobic nitric oxide reductase transcription regulator
Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:AEB82558.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_250_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31164..33473
DNA (2310bp) protein (770aa)
nitric oxide reductase large subunit; K04561 nitric oxide reductase subunit B [EC:1.7.2.5]
Nitric oxide reductase large subunit n=4 Tax=Alicycliphilus RepID=F4GCV4_ALIDK
Nitric oxide reductase large subunit {ECO:0000313|EMBL:AEB82557.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Displaying items 1-30 of 65 in total

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