ggKbase home page

SCNpilot_expt_300_bf_scaffold_315_curated

Search features with annotation key words

Displaying items 61-90 of 148 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_315_curated_61
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69974..70651)
DNA (678bp) protein (226aa)
Sporulation domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX00_ALIDB
Sporulation domain-containing protein
Sporulation domain-containing protein {ECO:0000313|EMBL:GAO25501.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_62
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70674..71522)
DNA (849bp) protein (283aa)
biotin/acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin/acetyl-CoA-carboxylase ligase n=2 Tax=Alicycliphilus denitrificans RepID=E8TWZ9_ALIDB
Biotin/acetyl-CoA-carboxylase ligase {ECO:0000313|EMBL:AEB86844.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_63
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71519..72070)
DNA (552bp) protein (184aa)
Nuclear protein SET n=2 Tax=Alicycliphilus denitrificans RepID=E8TWZ8_ALIDB
nuclear protein SET; K07117
Nuclear protein SET {ECO:0000313|EMBL:AEB86843.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_64
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72170..75091
DNA (2922bp) protein (974aa)
DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
DNA topoisomerase III n=2 Tax=Alicycliphilus denitrificans RepID=E8TWZ7_ALIDB
SCNpilot_expt_300_bf_scaffold_315_curated_65
unknown

Not on your lists

76893..76997
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_315_curated_66
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77864..78253
DNA (390bp) protein (130aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=Alicycliphilus denitrificans RepID=E8TWZ6_ALIDB
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADV01899.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_67
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78267..79028
DNA (762bp) protein (254aa)
fabG; 3-ketoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCV8_ACISJ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACM34759.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_300_bf_scaffold_315_curated_68
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79031..79729
DNA (699bp) protein (233aa)
Glutathione S-transferase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWZ4_ALIDB
glutathione s-transferase domain protein; K11209 GST-like protein
Glutathione S-transferase domain protein {ECO:0000313|EMBL:ADV01897.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_69
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79778..81865)
DNA (2088bp) protein (696aa)
CoA-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003749AE6
CoA-binding domain-containing protein {ECO:0000313|EMBL:GAD23284.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
CoA-binding domain protein
SCNpilot_expt_300_bf_scaffold_315_curated_70
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82016..82993)
DNA (978bp) protein (326aa)
MFS transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FDC43
Uncharacterized protein {ECO:0000313|EMBL:GAD23285.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_315_curated_71
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83016..83375)
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWZ1_ALIDB
hypothetical protein; K07068
Uncharacterized protein {ECO:0000313|EMBL:AEB86836.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_72
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83380..84531)
DNA (1152bp) protein (384aa)
Thiolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GA32_ALIDK
thiolase
Thiolase {ECO:0000313|EMBL:AEB86835.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_73
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84528..85370)
DNA (843bp) protein (281aa)
Regulatory protein IclR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWY9_ALIDB
regulatory protein iclr
Regulatory protein {ECO:0000313|EMBL:GAO25489.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_74
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85549..86301
DNA (753bp) protein (251aa)
DTW domain containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWY8_ALIDB
dtw domain containing protein; K05812 conserved hypothetical protein
DTW domain-containing protein {ECO:0000313|EMBL:GAO25488.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_75
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

86301..86924
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWY7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO25487.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_76
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87073..88074
DNA (1002bp) protein (334aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWY6_ALIDB
short-chain dehydrogenase/reductase sdr
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV01889.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_77
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88220..88696
DNA (477bp) protein (159aa)
Transcription activator effector binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWY5_ALIDB
transcriptional activator ligand binding domain-containing protein
Transcriptional activator ligand binding domain-containing protein {ECO:0000313|EMBL:GAO25484.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_78
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88796..89686)
DNA (891bp) protein (297aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWY4_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV01887.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_79
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89793..91154
DNA (1362bp) protein (454aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWY3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01886.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_80
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91173..91526
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWY2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01885.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_81
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91538..92602
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TY15_9RHOB
Amidohydrolase {ECO:0000313|EMBL:KGM49884.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
amidohydrolase 2
SCNpilot_expt_300_bf_scaffold_315_curated_82
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92647..93876
DNA (1230bp) protein (410aa)
Putative UreA/short-chain amide ABC transporter n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IJV0_METNO
LivK protein {ECO:0000313|EMBL:BAQ47710.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
putative UreA/short-chain amide ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_300_bf_scaffold_315_curated_83
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93899..94867
DNA (969bp) protein (323aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003797162
Uncharacterized protein {ECO:0000313|EMBL:GAD23298.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_315_curated_84
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

94921..95394
DNA (474bp) protein (158aa)
peptidylprolyl isomerase, fkbp-type; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
Peptidylprolyl isomerase, FKBP-type n=2 Tax=Alicycliphilus denitrificans RepID=E8TWY0_ALIDB
Peptidylprolyl isomerase, FKBP-type {ECO:0000313|EMBL:AEB86825.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_85
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96332..97672
DNA (1341bp) protein (447aa)
TonB-denpendent receptor n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000369398D
Tonb-dependent siderophore receptor {ECO:0000313|EMBL:GAD23300.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
tonb-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_300_bf_scaffold_315_curated_86
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

97912..99096
DNA (1185bp) protein (395aa)
PepSY-associated TM helix domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWX8_ALIDB
PepSY-associated TM helix domain-containing protein
PepSY-associated TM helix domain-containing protein {ECO:0000313|EMBL:ADV01881.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_87
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99169..99834)
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWX7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO25477.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_88
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99831..100424)
DNA (594bp) protein (198aa)
Carboxymuconolactone decarboxylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TWX6_ALIDB
carboxymuconolactone decarboxylase
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:AEB86821.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_89
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100382..101353)
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWX5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01878.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_90
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101410..102240)
DNA (831bp) protein (277aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEB86819.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEB86819.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TWX4_ALIDB
Displaying items 61-90 of 148 in total

View Taxonomy