ggKbase home page

SCNpilot_expt_300_bf_scaffold_315_curated

Search features with annotation key words

Displaying items 121-148 of 148 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_315_curated_121
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136164..136478)
DNA (315bp) protein (105aa)
Candidate transporter n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0Y2_RAMTT
transporter; K11741 quaternary ammonium compound-resistance protein SugE
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_300_bf_scaffold_315_curated_122
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136803..137759)
DNA (957bp) protein (319aa)
Lipase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW60_ALIDB
lipase
Lipase {ECO:0000313|EMBL:ADV01834.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_315_curated_123
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(137835..138833)
DNA (999bp) protein (333aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9C7_ALIDK
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_expt_300_bf_scaffold_315_curated_124
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138839..140008)
DNA (1170bp) protein (390aa)
phosphoribosylaminoimidazole carboxylase, atpase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycli
Phosphoribosylaminoimidazole carboxylase, ATPase subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TW58_ALIDB
SCNpilot_expt_300_bf_scaffold_315_curated_125
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(140005..140502)
DNA (498bp) protein (166aa)
phosphoribosylaminoimidazole carboxylase, catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitr
N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW57_ALIDB
SCNpilot_expt_300_bf_scaffold_315_curated_126
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140644..141552
DNA (909bp) protein (303aa)
Thioredoxin n=2 Tax=Alicycliphilus denitrificans RepID=E8TW56_ALIDB
thioredoxin; K05838 putative thioredoxin
Thioredoxin {ECO:0000313|EMBL:GAO21188.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_127
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141602..142522)
DNA (921bp) protein (307aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW55_ALIDB
SCNpilot_expt_300_bf_scaffold_315_curated_128
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142822..143169
DNA (348bp) protein (116aa)
Ribosomal subunit interface protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TW54_ALIDB
ribosomal subunit interface protein; K05808 putative sigma-54 modulation protein
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:AEB86781.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_129
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143818..144771
DNA (954bp) protein (318aa)
hpr serine kinase domain-containing protein; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrif
HPr kinase/phosphorylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW52_ALIDB
SCNpilot_expt_300_bf_scaffold_315_curated_130
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144779..145198)
DNA (420bp) protein (140aa)
Ferric-uptake regulator n=2 Tax=Alicycliphilus denitrificans RepID=E8TW51_ALIDB
ferric-uptake regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator
Ferric uptake transcriptional repressor protein {ECO:0000313|EMBL:GAO25421.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_131
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145310..145852
DNA (543bp) protein (181aa)
SmpA/OmlA domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TW50_ALIDB
SmpA/OmlA domain-containing protein; K06186 small protein A
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_132
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145907..146728
DNA (822bp) protein (274aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW49_ALIDB
SCNpilot_expt_300_bf_scaffold_315_curated_133
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146736..147389
DNA (654bp) protein (218aa)
MotA/TolQ/ExbB proton channel n=2 Tax=Alicycliphilus denitrificans RepID=E8TW48_ALIDB
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:GAO25418.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_315_curated_134
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

147396..147824
DNA (429bp) protein (143aa)
Biopolymer transport protein ExbD/TolR n=2 Tax=Alicycliphilus denitrificans RepID=E8TW47_ALIDB
Biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:AEB86774.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_135
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(147921..149543)
DNA (1623bp) protein (541aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Achromobacter piechaudii HLE RepID=J4J6H2_9BURK
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EHK64919.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein
SCNpilot_expt_300_bf_scaffold_315_curated_136
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(149547..152141)
DNA (2595bp) protein (865aa)
Diguanylate cyclase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW46_ALIDB
Diguanylate cyclase {ECO:0000313|EMBL:ADV01820.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
diguanylate cyclase
SCNpilot_expt_300_bf_scaffold_315_curated_137
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152424..152906)
DNA (483bp) protein (161aa)
Cytochrome c-type protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TW45_ALIDB
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:AEB86772.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_138
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153266..155239
DNA (1974bp) protein (658aa)
Sigma-54 factor interaction domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TW44_ALIDB
GAF modulated sigma54 specific transcriptional regulator
GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:AEB86771.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_315_curated_139
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155253..155780
DNA (528bp) protein (176aa)
Cytochrome b/b6 domain protein n=2 Tax=Burkholderia RepID=E8YSF5_9BURK
Cytochrome b/b6 domain-containing protein
Cytochrome b/b6 domain-containing protein {ECO:0000313|EMBL:AFT88022.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
SCNpilot_expt_300_bf_scaffold_315_curated_140
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

158055..158648
DNA (594bp) protein (198aa)
Pentapeptide repeat-containing protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y6L5_9RHOO
pentapeptide repeat-containing protein
Pentapeptide repeat-containing protein {ECO:0000313|EMBL:ENO87225.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
SCNpilot_expt_300_bf_scaffold_315_curated_141
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

158650..159138
DNA (489bp) protein (163aa)
Putative cytochrome c550 n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K9T5_AZOSB
exaB2; putative cytochrome c550
Putative cytochrome c550 {ECO:0000313|EMBL:CAL95590.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_300_bf_scaffold_315_curated_142
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159146..159418
DNA (273bp) protein (91aa)
Coenzyme PQQ synthesis D id=1262595 bin=GWE1_Burkholderiales_65_30 species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
coenzyme PQQ synthesis D; K06138 pyrroloquinoline quinone biosynthesis protein D
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_300_bf_scaffold_315_curated_143
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159608..159943
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003710750
Cytochrome C553 {ECO:0000313|EMBL:EXU79848.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
SCNpilot_expt_300_bf_scaffold_315_curated_144
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159940..161202
DNA (1263bp) protein (421aa)
Flavocytochrome c flavin subunit SoxF n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HQS8_RUBGI
soxF; flavocytochrome c flavin subunit SoxF
Flavocytochrome c flavin subunit SoxF {ECO:0000313|EMBL:BAL95365.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_300_bf_scaffold_315_curated_145
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161205..161510)
DNA (306bp) protein (102aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RET3_9RHOO
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:EGK71414.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
Sel1 domain-containing protein; K07126
SCNpilot_expt_300_bf_scaffold_315_curated_146
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161507..161839)
DNA (333bp) protein (111aa)
Cytochrome c, class I id=1262583 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
class I cytochrome c
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_300_bf_scaffold_315_curated_147
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162105..162863
DNA (759bp) protein (253aa)
Putative uncharacterized protein id=1262579 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_300_bf_scaffold_315_curated_148
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

162860..163837
DNA (978bp) protein (326aa)
Beta-lactamase domain protein id=1262580 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
beta-lactamase domain-containing protein
Tax=GWE1_Burkholderiales_65_30_curated
Displaying items 121-148 of 148 in total

View Taxonomy