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SCNpilot_expt_300_bf_scaffold_1175_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1175_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..724)
DNA (723bp) protein (241aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MII9_ACIET
conjugal transfer protein Trbj
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:GAD24983.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_300_bf_scaffold_1175_curated_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(721..3192)
DNA (2472bp) protein (824aa)
CagE TrbE VirB component of type IV transporter system n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ0_ACIET
CagE TrbE VirB component of type IV transporter system {ECO:0000313|EMBL:ACM34928.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
conjugal transfer ATPase Trbe; K03199 type IV secretion system protein VirB4
SCNpilot_expt_300_bf_scaffold_1175_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3208..3480)
DNA (273bp) protein (91aa)
conjugal transfer protein TrbD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000381E1AD
Conjugal transfer protein TrbD {ECO:0000313|EMBL:GAD24981.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_expt_300_bf_scaffold_1175_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3477..3860)
DNA (384bp) protein (128aa)
Conjugal transfer protein TrbC n=2 Tax=Comamonadaceae RepID=E7FJC4_9BURK
Conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AEB83963.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1175_curated_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3857..4891)
DNA (1035bp) protein (345aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTS3_DELAS
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ABX35337.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_300_bf_scaffold_1175_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4888..5352)
DNA (465bp) protein (155aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTS4_DELAS
CopG/DNA-binding domain-containing protein
CopG/DNA-binding domain-containing protein {ECO:0000313|EMBL:GAO21826.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1175_curated_7
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6000..7247
DNA (1248bp) protein (416aa)
Putative DNA coupling protein (Fragment) n=1 Tax=Ralstonia pickettii RepID=B6VNU7_RALPI
Putative DNA coupling protein {ECO:0000313|EMBL:CAR85894.1}; Flags: Fragment;; TaxID=329 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (Burkholderia pickettii).;"
MerR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_1175_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7611..7838)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV37_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00569.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1175_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7852..8778)
DNA (927bp) protein (309aa)
LysR substrate-binding protein n=2 Tax=Proteobacteria RepID=E8TV38_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00570.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1175_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11068..11706)
DNA (639bp) protein (213aa)
phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase {ECO:0000313|EMBL:ADV00572.1}; EC=2.3.1.8 {ECO:0000313|EMBL:ADV00572.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Phosphate acetyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV40_ALIDB
Displaying 10 items

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