ggKbase home page

SCNpilot_expt_300_bf_scaffold_276_curated

Search features with annotation key words

Displaying items 211-240 of 286 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_276_curated_211
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(225566..226888)
DNA (1323bp) protein (441aa)
Major facilitator superfamily MFS_1 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GB90_ALIDK
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEB84666.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_212
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227040..227699)
DNA (660bp) protein (220aa)
GntR domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZW2_ALIDB
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:AEB84665.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_213
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227672..228718)
DNA (1047bp) protein (349aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZW1_ALIDB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB84664.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_214
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

228829..229830
DNA (1002bp) protein (334aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=F4GB87_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84663.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_215
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

229839..231116
DNA (1278bp) protein (426aa)
Amidase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GB86_ALIDK
amidase
Amidase {ECO:0000313|EMBL:AEB84662.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_216
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231120..233747)
DNA (2628bp) protein (876aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
2-oxo-acid dehydrogenase E1 subunit (EC:1.2.4.1); K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GB85_ALIDK
SCNpilot_expt_300_bf_scaffold_276_curated_217
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

233836..234330
DNA (495bp) protein (165aa)
Transcriptional regulator n=1 Tax=Acidovorax sp. CF316 RepID=J1EJS7_9BURK
ArsR family transcriptional regulator {ECO:0000313|EMBL:KJA09453.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
asnC family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_276_curated_218
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

234462..236174
DNA (1713bp) protein (571aa)
Methyl-accepting chemotaxis protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XIA2_DELAC
methyl-accepting chemotaxis domain-containing protein; K03406 methyl-accepting chemotaxis protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_300_bf_scaffold_276_curated_219
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(236187..236525)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GB83_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23563.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_220
Paraglaciecola mesophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(236792..238876)
DNA (2085bp) protein (695aa)
Peptidase S8/S53 family protein n=1 Tax=Glaciecola mesophila KMM 241 RepID=K6YWR6_9ALTE
Peptidase S8/S53 family protein {ECO:0000313|EMBL:GAC22622.1}; TaxID=1128912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola mesophila KMM 241.;"
subtilisin-like serine protease
SCNpilot_expt_300_bf_scaffold_276_curated_221
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239145..239393)
DNA (249bp) protein (83aa)
Transposase IS4 family protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6ZB14_9RHOO
Transposase IS4 family protein {ECO:0000313|EMBL:ENO89359.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
transposase IS4 family protein
SCNpilot_expt_300_bf_scaffold_276_curated_222
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239807..240685)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZ71_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23563.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_223
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(240866..241528)
DNA (663bp) protein (221aa)
Phospholipase/Carboxylesterase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ70_ALIDB
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
Phospholipase {ECO:0000313|EMBL:GAO23564.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_224
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241558..242397)
DNA (840bp) protein (280aa)
Extradiol ring-cleavage dioxygenase class III protein subunit B n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ69_ALIDB
extradiol ring-cleavage dioxygenase class III protein subunit B
Extradiol ring-cleavage dioxygenase class III protein subunit B {ECO:0000313|EMBL:AEB84657.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_225
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(242499..242921)
DNA (423bp) protein (141aa)
Class I peptide chain release factor n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ68_ALIDB
Class I peptide chain release factor; K15034 ribosome-associated protein
Class I peptide chain release factor {ECO:0000313|EMBL:GAO23566.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_226
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(242918..243814)
DNA (897bp) protein (299aa)
Alpha/beta hydrolase fold protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ67_ALIDB
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AEB84655.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_227
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(243808..244257)
DNA (450bp) protein (150aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
3-dehydroquinate dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ66_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_228
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(244360..244701)
DNA (342bp) protein (114aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ65_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23569.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_229
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

244839..246650
DNA (1812bp) protein (604aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
glutaminyl-tRNA synthetase; K01886 glutaminyl-tRNA synthetase [EC:6.1.1.18]
Glutamine--tRNA ligase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ64_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_230
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

246671..247210
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ63_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84651.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_231
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247276..248082
DNA (807bp) protein (269aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ62_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23572.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_232
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(248156..249559)
DNA (1404bp) protein (468aa)
fumarate lyase; K01744 aspartate ammonia-lyase [EC:4.3.1.1]
Aspartate ammonia-lyase {ECO:0000313|EMBL:AEB84649.1}; EC=4.3.1.1 {ECO:0000313|EMBL:AEB84649.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Fumarate lyase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ61_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_233
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249766..250662
DNA (897bp) protein (299aa)
Peptidase M23 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZ60_ALIDB
peptidase m23
Peptidase M23 {ECO:0000313|EMBL:ADU99769.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_234
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

250659..251225
DNA (567bp) protein (189aa)
pseudouridine synthase; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Pseudouridine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZ59_ALIDB
SCNpilot_expt_300_bf_scaffold_276_curated_235
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(251259..252134)
DNA (876bp) protein (292aa)
RarD protein, DMT superfamily transporter n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAK7_ALIDK
RarD protein, DMT superfamily transporter; K05786 chloramphenicol-sensitive protein RarD
RarD protein, DMT superfamily transporter {ECO:0000313|EMBL:AEB84646.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_236
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252236..252694
DNA (459bp) protein (153aa)
Nuclease (SNase domain-containing protein) n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ57_ALIDB
nuclease
Nuclease {ECO:0000313|EMBL:GAO23577.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_276_curated_237
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

252722..253957
DNA (1236bp) protein (412aa)
Major facilitator superfamily MFS_1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ56_ALIDB
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADU99765.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_238
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(254008..254934)
DNA (927bp) protein (309aa)
Phosphoesterase DHHA1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ55_ALIDB
phosphoesterase DHHA1
Phosphoesterase DHHA1 {ECO:0000313|EMBL:ADU99764.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_276_curated_239
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255037..255330
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ54_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84642.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_276_curated_240
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

255372..256091
DNA (720bp) protein (240aa)
pseudouridine synthase; K06175 tRNA pseudouridine65 synthase [EC:5.4.99.26]
Pseudouridine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAK2_ALIDK
Pseudouridine synthase {ECO:0000313|EMBL:GAO23581.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying items 211-240 of 286 in total

View Taxonomy