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SCNpilot_expt_300_bf_scaffold_861_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_861_curated_1
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17..445
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GX33_CUPNN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI81903.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_expt_300_bf_scaffold_861_curated_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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484..1299
DNA (816bp) protein (272aa)
Transcriptional regulator, GntR family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTK7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AIJ49364.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
transcriptional regulator, GntR family
SCNpilot_expt_300_bf_scaffold_861_curated_3
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1292..1996)
DNA (705bp) protein (235aa)
Nitroreductase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LBT4_RALME
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ABF12392.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_300_bf_scaffold_861_curated_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2062..3309
DNA (1248bp) protein (416aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LBS4_RALME
CoA transferase {ECO:0000313|EMBL:AIJ49367.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
caiB; L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_expt_300_bf_scaffold_861_curated_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3306..4499
DNA (1194bp) protein (398aa)
Putative Acetyl-CoA C-acyltransferase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LBS7_RALME
Acetyl-CoA acyltransferase {ECO:0000313|EMBL:AIJ49368.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
Acetyl-CoA C-acyltransferase
SCNpilot_expt_300_bf_scaffold_861_curated_6
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4496..4948
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LBS8_RALME
nucleic-acid-binding protein; K07068
Uncharacterized protein {ECO:0000313|EMBL:ABF12398.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_300_bf_scaffold_861_curated_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4982..6139
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GX29_CUPNN
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AIJ49370.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
SCNpilot_expt_300_bf_scaffold_861_curated_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6231..7229)
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni S44 RepID=D8D3G3_COMTE
Uncharacterized protein {ECO:0000313|EMBL:EFI62513.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_861_curated_9
unknown

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comp(7226..7342)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_861_curated_10
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7432..8340
DNA (909bp) protein (303aa)
Transcriptional regulator, AraC family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4M9_LEPCP
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACB33468.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_300_bf_scaffold_861_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8624..9052
DNA (429bp) protein (143aa)
Uncharacterized protein family UPF0093 n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG7_ALIDB
hypothetical protein; K08973 putative membrane protein
Uncharacterized protein family UPF0093 {ECO:0000313|EMBL:ADU98177.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_861_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9078..10175
DNA (1098bp) protein (366aa)
VanZ family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVG8_ALIDB
vanz family protein
VanZ family protein {ECO:0000313|EMBL:ADU98178.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_861_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10185..10526
DNA (342bp) protein (114aa)
Ferredoxin-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG9_ALIDB
ferredoxin-like protein
Ferredoxin-like protein {ECO:0000313|EMBL:ADU98179.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_861_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10610..11245
DNA (636bp) protein (212aa)
Putative transmembrane protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH0_ALIDB
Transmembrane protein {ECO:0000313|EMBL:GAO26086.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
transmembrane protein; K07018
SCNpilot_expt_300_bf_scaffold_861_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11347..12510
DNA (1164bp) protein (388aa)
beta-lactamase (EC:3.5.2.6); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Beta-lactamase {ECO:0000313|EMBL:AEB82777.1}; EC=3.5.2.6 {ECO:0000313|EMBL:AEB82777.1};; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Beta-lactamase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH1_ALIDB
SCNpilot_expt_300_bf_scaffold_861_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12612..12989
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH2_ALIDB
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_861_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13153..13626
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH3_ALIDB
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_861_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13713..15821
DNA (2109bp) protein (703aa)
Elongation factor G n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH4_ALIDB
translation elongation factor g; K02355 elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_861_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..17236
DNA (1185bp) protein (395aa)
Elongation factor Tu n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH5_ALIDB
translation elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 19 items

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