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SCNpilot_expt_300_bf_scaffold_568_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_568_curated_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1709)
DNA (1707bp) protein (569aa)
Putative receptor n=2 Tax=Pseudomonas stutzeri RepID=Q9L8Q7_PSEST
Putative receptor {ECO:0000313|EMBL:AAF33135.1}; Flags: Precursor;; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_568_curated_2
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1837..2778
DNA (942bp) protein (314aa)
UPI0003D6352D related cluster n=1 Tax=unknown RepID=UPI0003D6352D
Uncharacterized protein {ECO:0000313|EMBL:AHC45620.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
transcriptional regulator, AraC family
SCNpilot_expt_300_bf_scaffold_568_curated_3
Pseudoalteromonas citrea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2874..3296)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000377EE86
Uncharacterized protein {ECO:0000313|EMBL:KDC52653.1}; TaxID=43655 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas citrea.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_568_curated_4
Pseudomonas amygdali, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3299..5056)
DNA (1758bp) protein (586aa)
ABC transporter ATP-binding/permease protein n=1 Tax=Pseudomonas syringae pv. morsprunorum str. M302280 RepID=F3DWK4_9PSED
uncharacterized LOC100496829
ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:EGH10404.1}; TaxID=629259 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali.;" source="Pseudomonas amygdali pv. morsprunorum str. M302280.;"
SCNpilot_expt_300_bf_scaffold_568_curated_5
Pseudomonas syringae group genomosp. 3, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5053..6810)
DNA (1758bp) protein (586aa)
ABC transporter, ATP-binding/permease protein n=1 Tax=Pseudomonas syringae pv. tomato T1 RepID=E2MGK6_PSEUB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGK95858.1}; TaxID=323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae pv. tomato.;"
ABC transporter ATP-binding protein/permease; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_300_bf_scaffold_568_curated_6
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6892..8106)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QSZ7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ETF02455.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
siderophore transporter RhtX/FptX family protein
SCNpilot_expt_300_bf_scaffold_568_curated_7
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8123..10159)
DNA (2037bp) protein (679aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QR53_9BURK
TonB-dependent receptor Plug domain-containing protein {ECO:0000313|EMBL:AHG62996.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_568_curated_8
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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10265..11191
DNA (927bp) protein (309aa)
Transcriptional regulator, AraC family n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E7K7_9GAMM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EGV27940.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_568_curated_9
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11262..12479)
DNA (1218bp) protein (406aa)
UPI0003D68D1D related cluster n=1 Tax=unknown RepID=UPI0003D68D1D
Muropeptide transporter {ECO:0000313|EMBL:CKG97532.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
major facilitator superfamily transporter; K05373 MFS transporter, putative signal transducer
SCNpilot_expt_300_bf_scaffold_568_curated_10
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12469..14580)
DNA (2112bp) protein (704aa)
UPI0003D6989E related cluster n=1 Tax=unknown RepID=UPI0003D6989E
Iron aquisition outermembrane yersiniabactin receptor (FyuA,Psn,pesticin receptor) {ECO:0000313|EMBL:AHC45648.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
TonB-dependent siderophore receptor family protein
SCNpilot_expt_300_bf_scaffold_568_curated_11
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14695..15660
DNA (966bp) protein (322aa)
AraC family transcription regulator protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T2L1_ALCXX
Transcriptional activator FtrA {ECO:0000313|EMBL:CKG97560.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
AraC family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_568_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15696..16142
DNA (447bp) protein (149aa)
azurin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037820C1
Azurin {ECO:0000313|EMBL:GAD23505.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
azurin
SCNpilot_expt_300_bf_scaffold_568_curated_13
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16989..17357
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI000395A662
Uncharacterized protein {ECO:0000313|EMBL:ENO90379.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_568_curated_14
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17415..18062
DNA (648bp) protein (216aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
manganese and iron superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
superoxide dismutase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395A167
SCNpilot_expt_300_bf_scaffold_568_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18005..18913
DNA (909bp) protein (303aa)
UPI0003D3EC9B related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3EC9B
Predicted divalent heavy-metal cations transporter {ECO:0000313|EMBL:GAD23592.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
zinc/iron permease; K07238 zinc transporter, ZIP family
SCNpilot_expt_300_bf_scaffold_568_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19430..20116
DNA (687bp) protein (229aa)
Heavy metal response regulator n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT43_ALIDB
Two component heavy metal response transcriptional regulator {ECO:0000313|EMBL:GAO23354.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
heavy metal response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
SCNpilot_expt_300_bf_scaffold_568_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20212..21120
DNA (909bp) protein (303aa)
heavy metal sensor kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
Heavy metal sensor kinase n=1 Tax=Ralstonia sp. PBA RepID=I9KS01_9RALS
Heavy metal sensor kinase {ECO:0000313|EMBL:GAO23355.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying 17 items

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