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SCNpilot_expt_300_bf_scaffold_1149_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1149_curated_1
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..564)
DNA (564bp) protein (188aa)
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK09_9BURK
heavy metal efflux pump, cobalt-zinc-cadmium
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_300_bf_scaffold_1149_curated_2
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1343..2398)
DNA (1056bp) protein (352aa)
RND family efflux transporter, MFP subunit n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK10_9BURK
membrane-fusion protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_300_bf_scaffold_1149_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3138..3476)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYI6_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44880.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_300_bf_scaffold_1149_curated_4
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3740..5074
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
Heavy metal sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVN8_9BURK
heavy metal sensor signal transduction histidine kinase
SCNpilot_expt_300_bf_scaffold_1149_curated_5
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5106..6422)
DNA (1317bp) protein (439aa)
Major facilitator superfamily MFS_1 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AN3_POLSJ
major facilitator transporter
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_300_bf_scaffold_1149_curated_6
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6524..6802
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AN4_POLSJ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_300_bf_scaffold_1149_curated_7
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6878..7228)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AL8_POLSJ
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_300_bf_scaffold_1149_curated_8
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7261..7491)
DNA (231bp) protein (77aa)
membrane protein n=1 Tax=Comamonas sp. B-9 RepID=UPI000395A8E3
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_300_bf_scaffold_1149_curated_9
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9686..10369
DNA (684bp) protein (228aa)
two-component response regulator id=12553532 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
two-component response regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_300_bf_scaffold_1149_curated_10
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11426..11872
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WC78_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77766.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1149_curated_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12668..13243)
DNA (576bp) protein (192aa)
UPI0003D3D1D1 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3D1D1
Uncharacterized protein {ECO:0000313|EMBL:GAD22070.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1149_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13426..13845
DNA (420bp) protein (140aa)
UPI0003D3BFF6 related cluster n=1 Tax=unknown RepID=UPI0003D3BFF6
Uncharacterized protein {ECO:0000313|EMBL:GAD22069.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1149_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15108..15593
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W742_ACISJ
Uncharacterized protein {ECO:0000313|EMBL:GAO22096.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1149_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16224..16547
DNA (324bp) protein (108aa)
Methyltransferase type 11 n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R0_ALIDB
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADV00049.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1149_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16549..17226
DNA (678bp) protein (226aa)
DTW domain containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDA8_ALIDK
DTW domain-containing protein
DTW domain containing protein {ECO:0000313|EMBL:AEB84867.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_1149_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17243..17824
DNA (582bp) protein (194aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Uncharacterized peroxidase-related enzyme n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R2_ALIDB
peroxidase-like protein
SCNpilot_expt_300_bf_scaffold_1149_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17889..19631)
DNA (1743bp) protein (581aa)
Sulfatase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1R3_ALIDB
Sulfatase {ECO:0000313|EMBL:ADV00052.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
sulfatase; K03760 phosphoethanolamine transferase
SCNpilot_expt_300_bf_scaffold_1149_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19628..20329)
DNA (702bp) protein (234aa)
PAP2 (Acid phosphatase) superfamily protein-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R4_ALIDB
pap2 (acid phosphatase) superfamily protein-like protein
PAP2 (Acid phosphatase) superfamily protein-like protein {ECO:0000313|EMBL:ADV00053.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1149_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20475..21149
DNA (675bp) protein (225aa)
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R5_ALIDB
response regulator receiver; K02483 two-component system, OmpR family, response regulator
Response regulator receiver {ECO:0000313|EMBL:ADV00054.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1149_curated_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21168..22529
DNA (1362bp) protein (454aa)
integral membrane sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
ATP-binding region ATPase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R6_ALIDB
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:GAO23245.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1149_curated_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22814..23584)
DNA (771bp) protein (257aa)
Enoyl-CoA hydratase/isomerase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R7_ALIDB
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO23244.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1149_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23589..24551)
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00057.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1149_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24593..25600)
DNA (1008bp) protein (336aa)
NADPH:quinone reductase (EC:1.6.5.5); K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Alcohol dehydrogenase zinc-binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1R9_ALIDB
NADPH:quinone reductase {ECO:0000313|EMBL:GAO23242.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1149_curated_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25600..26199)
DNA (600bp) protein (200aa)
Formyl-CoA transferase {ECO:0000313|EMBL:AEB84876.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEB84876.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S0_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
SCNpilot_expt_300_bf_scaffold_1149_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26908..28077
DNA (1170bp) protein (390aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Acyl-CoA dehydrogenase domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S1_ALIDB
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO23240.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1149_curated_26
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28095..29150
DNA (1056bp) protein (352aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00061.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_1149_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29168..30292
DNA (1125bp) protein (375aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1S3_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
L-carnitine dehydratase {ECO:0000313|EMBL:GAO23238.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1149_curated_28
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30335..31036
DNA (702bp) protein (234aa)
Regulatory protein TetR n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S4_ALIDB
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:GAO23237.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_1149_curated_29
unknown

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31134..31211
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 29 items

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