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SCNpilot_cont_1000_p_scaffold_1889_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1889_curated_1
unknown

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comp(96..764)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1889_curated_2
unknown

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comp(1139..1261)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1889_curated_3
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1300..1608)
DNA (309bp) protein (103aa)
Transposase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4I7_9RHIZ
Transposase {ECO:0000313|EMBL:EIM31129.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ISAfe4, transposase orf3
SCNpilot_cont_1000_p_scaffold_1889_curated_4
unknown

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1848..1985
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1889_curated_5
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1970..3037
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Streptomyces sp. 303MFCol5.2 RepID=UPI00037E1B17
IS4 family transposase {ECO:0000313|EMBL:ELQ77057.1}; TaxID=1265868 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
IS4 family transposase
SCNpilot_cont_1000_p_scaffold_1889_curated_6
unknown

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3040..3192
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1889_curated_7
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(3253..4332)
DNA (1080bp) protein (360aa)
(S)-2-hydroxy-acid oxidase (EC:1.1.3.15)
FMN-dependent dehydrogenase superfamily n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VJJ4_9CYAN
2-hydroxy-acid oxidase {ECO:0000313|EMBL:KIE13681.1}; TaxID=1479485 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
SCNpilot_cont_1000_p_scaffold_1889_curated_8
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4325..6148)
DNA (1824bp) protein (608aa)
Uncharacterized protein {ECO:0000313|EMBL:AIK96266.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
Multidrug resistance protein Atm1 id=4064194 bin=GWA2_TM6_36_9 species=GWA2_TM6_36_9 genus=GWA2_TM6_36_9 taxon_order=GWA2_TM6_36_9 taxon_class=GWA2_TM6_36_9 phylum=TM6 tax=GWA2_TM6_36_9 organism_group=TM6
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_1000_p_scaffold_1889_curated_9
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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6371..7138
DNA (768bp) protein (256aa)
Linear gramicidin dehydrogenase LgrE {ECO:0000313|EMBL:ERT06762.1}; EC=1.1.-.- {ECO:0000313|EMBL:ERT06762.1};; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
gramicidin S biosynthesis protein (EC:3.1.2.-)
hypothetical protein n=1 Tax=Microchaete sp. PCC 7126 RepID=UPI00034A8446
SCNpilot_cont_1000_p_scaffold_1889_curated_10
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7170..8129)
DNA (960bp) protein (320aa)
Taurine catabolism dioxygenase TauD/TfdA n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUJ2_HERA2
Uncharacterized protein {ECO:0000313|EMBL:AHH99499.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
taurine catabolism dioxygenase TauD/TfdA
SCNpilot_cont_1000_p_scaffold_1889_curated_11
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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8273..9358
DNA (1086bp) protein (362aa)
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:ABX04531.1}; EC=1.13.11.27 {ECO:0000313|EMBL:ABX04531.1};; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUK4_HERA2
4-hydroxyphenylpyruvate dioxygenase
SCNpilot_cont_1000_p_scaffold_1889_curated_12
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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9351..10556
DNA (1206bp) protein (402aa)
Putative transcriptional regulator, GntR family n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUK3_HERA2
GntR family transcriptional regulator
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ABX04530.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_cont_1000_p_scaffold_1889_curated_13
Azospirillum sp. CAG:260, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10979..11203
DNA (225bp) protein (75aa)
DNA mismatch repair protein MutL n=1 Tax=Azospirillum sp. CAG:260 RepID=R6HZ65_9PROT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1262706 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; environmental samples.;" source="Azospirillum sp. CAG:260.;"
mutL; DNA mismatch repair protein MutL
SCNpilot_cont_1000_p_scaffold_1889_curated_14
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11466..11849
DNA (384bp) protein (128aa)
transposase IS4 family protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BB44
Uncharacterized protein {ECO:0000313|EMBL:AIK96224.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
transposase IS4 family protein
SCNpilot_cont_1000_p_scaffold_1889_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11968..12414
DNA (447bp) protein (149aa)
transposase IS4 family protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225BB44
Uncharacterized protein {ECO:0000313|EMBL:AIL13890.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Transposase of ISAli17, IS5 family, subgroup IS903
SCNpilot_cont_1000_p_scaffold_1889_curated_16
Streptoalloteichus hindustanus, Streptoalloteichus, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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12891..13124
DNA (234bp) protein (78aa)
Tlm Orf16 n=1 Tax=Streptoalloteichus hindustanus RepID=A4KUC1_STRHI
Tlm Orf16 {ECO:0000313|EMBL:ABL74949.1}; TaxID=2017 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Streptoalloteichus.;" source="Streptoalloteichus hindustanus.;"
mbtH; MbtH protein
SCNpilot_cont_1000_p_scaffold_1889_curated_17
unknown

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comp(13286..13657)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1889_curated_18
CG_Cyano_01, Cyanobacteria, Bacteria

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comp(13675..14049)
DNA (375bp) protein (125aa)
phosphopantethiene-protein transferase; K06133 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
4''''-phosphopantetheinyl transferase n=1 Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B3A60E
Tax=CG_Cyano_01
SCNpilot_cont_1000_p_scaffold_1889_curated_19
unknown

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comp(14336..14449)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1889_curated_20

Not on your lists

14612..15247
DNA (636bp) protein (212aa)
Putative thioesterase involved in non-ribosomal peptide biosynthesis n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TK89_9CYAN
Marine sediment metagenome DNA, contig: S01H1_S30153 {ECO:0000313|EMBL:GAG40902.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
thioesterase
SCNpilot_cont_1000_p_scaffold_1889_curated_21
Gasterosteus aculeatus, Gasterosteus, Perciformes, Neopterygii, Chordata, Metazoa

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comp(15410..15691)
DNA (282bp) protein (94aa)
PREDICTED: hydroxyacid oxidase 1 n=1 Tax=Alligator sinensis RepID=UPI0003C2910C
Uncharacterized protein {ECO:0000313|Ensembl:ENSGACP00000006554}; TaxID=69293 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus.;" source="Gasterosteus aculeatus (Three-spined stickleback).;"
hydroxyacid oxidase 1-like
SCNpilot_cont_1000_p_scaffold_1889_curated_22
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15821..17416
DNA (1596bp) protein (532aa)
Putative Zn-dependent hydrolase of beta-lactamase fold protein n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9X6X9_9NOST
Uncharacterized protein {ECO:0000313|EMBL:AIK96255.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
uncharacterized LOC100204796
SCNpilot_cont_1000_p_scaffold_1889_curated_23
Legionella oakridgensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17515..19332
DNA (1818bp) protein (606aa)
putative Methionyl-tRNA formyltransferase (EC:2.1.2.9 5.1.1.11)
Putative Methionyl-tRNA formyltransferase n=1 Tax=Legionella pneumophila subsp. pneumophila RepID=I7HRP6_LEGPN
Non-ribosomal peptide synthetase modules-related protein {ECO:0000313|EMBL:AHE65861.1}; TaxID=1268635 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella oakridgensis ATCC 33761 = DSM 21215.;"
Displaying 23 items

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