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SCNpilot_cont_300_bf_scaffold_1712_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1712_curated_1
unknown

Not on your lists

3..113
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1712_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125..1381
DNA (1257bp) protein (419aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
dadA; D-amino acid dehydrogenase small subunit (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] rbh
D-amino acid dehydrogenase small subunit n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JGI6_9RHIZ
SCNpilot_cont_300_bf_scaffold_1712_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1482..2804
DNA (1323bp) protein (441aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Aminotransferase class-III n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPR8_PARL1
Aminotransferase class-III {ECO:0000313|EMBL:ABS61901.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1712_curated_4
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2811..3974)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B1F7_9RHOO
small-conductance mechanosensitive channel
Tax=BJP_IG2103_Rhodocyclales_63_50
SCNpilot_cont_300_bf_scaffold_1712_curated_5
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4077..5945)
DNA (1869bp) protein (623aa)
Ferrous iron transport protein B n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SWV6_CAUSK
ferrous iron transport protein B; K04759 ferrous iron transport protein B
Ferrous iron transport protein B {ECO:0000313|EMBL:ABZ73164.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1712_curated_6
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5942..6220)
DNA (279bp) protein (93aa)
Fe2+ transport system protein A n=1 Tax=Caulobacter crescentus OR37 RepID=R0D3T6_CAUCE
Fe2+ transport system protein A {ECO:0000313|EMBL:ENZ83085.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
FeoA family protein; K04758 ferrous iron transport protein A
SCNpilot_cont_300_bf_scaffold_1712_curated_7
unknown

Not on your lists

6270..6422
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1712_curated_8
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6367..7284
DNA (918bp) protein (306aa)
Methylase/methyltransferase n=1 Tax=Limnobacter sp. MED105 RepID=A6GT74_9BURK
Methylase/methyltransferase {ECO:0000313|EMBL:EDM82566.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
type 11 methyltransferase
SCNpilot_cont_300_bf_scaffold_1712_curated_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7342..8379
DNA (1038bp) protein (346aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01738 cysteine synthase A [EC:2.5.1.47]
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6C9_9BRAD
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:EFI51876.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_300_bf_scaffold_1712_curated_10
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(8274..8852)
DNA (579bp) protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY15247.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_cont_300_bf_scaffold_1712_curated_11
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9252..9749
DNA (498bp) protein (166aa)
GCN5-related N-acetyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXG2_PARL1
Acetyltransferase, GNAT family {ECO:0000313|EMBL:CDO61260.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
N-acetyltransferase GCN5
SCNpilot_cont_300_bf_scaffold_1712_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9921..11363
DNA (1443bp) protein (481aa)
Amino acid/peptide transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH03_NITHX
amino acid/peptide transporter
Amino acid/peptide transporter {ECO:0000313|EMBL:ABE64494.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_1712_curated_13
unknown

Not on your lists

11462..11623
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1712_curated_14
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11580..13154)
DNA (1575bp) protein (525aa)
peptidyl-dipeptidase A (EC:3.4.15.1); K01283 peptidyl-dipeptidase A [EC:3.4.15.1]
Zn-dependent carboxypeptidase n=1 Tax=Caulobacter sp. AP07 RepID=J2GPH9_9CAUL
Zn-dependent carboxypeptidase {ECO:0000313|EMBL:EJL32210.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_1712_curated_15
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13263..14426
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036F527B
Cystathionine beta-lyase {ECO:0000313|EMBL:EWY41770.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
cystathionine beta-lyase
SCNpilot_cont_300_bf_scaffold_1712_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14764..16074)
DNA (1311bp) protein (437aa)
FAD-linked oxidoreductase {ECO:0000313|EMBL:ABS64588.1}; EC=1.1.3.8 {ECO:0000313|EMBL:ABS64588.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
FAD-linked oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXF5_PARL1
FAD-linked oxidoreductase
SCNpilot_cont_300_bf_scaffold_1712_curated_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16144..16989)
DNA (846bp) protein (282aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRA1_PARL1
Enoyl-CoA hydratase {ECO:0000313|EMBL:ETR75035.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
enoyl-CoA hydratase/isomerase
SCNpilot_cont_300_bf_scaffold_1712_curated_18
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17184..17720
DNA (537bp) protein (179aa)
Bacterioferritin n=2 Tax=Bordetella holmesii RepID=M5NPJ9_9BORD
Ferritin-like protein {ECO:0000313|EMBL:KCB40865.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
ferritin; K04047 starvation-inducible DNA-binding protein
SCNpilot_cont_300_bf_scaffold_1712_curated_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17800..18663)
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7Z2_SULAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ40055.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillus acidophilus (strain TPY).;"
SCNpilot_cont_300_bf_scaffold_1712_curated_20
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18958..19263)
DNA (306bp) protein (102aa)
Putative NADH dehydrogenase (Ubiquinone) Fe-S protein 4 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HY04_AZOC5
NADH dehydrogenase (ubiquinone) Fe-S protein 4
Putative NADH dehydrogenase (Ubiquinone) Fe-S protein 4 {ECO:0000313|EMBL:BAF87559.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_1712_curated_21
unknown

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comp(19244..19441)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1712_curated_22
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19455..19943)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HPM2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99493.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein; K09005 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1712_curated_23
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19971..20525)
DNA (555bp) protein (185aa)
cold-shock protein n=1 Tax=Amorphus coralli RepID=UPI00037278A6
Cold shock protein CspB {ECO:0000313|EMBL:CDO61280.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_cont_300_bf_scaffold_1712_curated_24
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20669..21313
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NSY9_9RHOB
Carbon monoxide dehydrogenase G protein {ECO:0000313|EMBL:GAN78100.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
carbon monoxide dehydrogenase subunit G (CoxG) family; K09386 hypothetical protein
SCNpilot_cont_300_bf_scaffold_1712_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21405..21881
DNA (477bp) protein (159aa)
2Fe-2S iron-sulfur cluster-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
(2Fe-2S)-binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXD6_PARL1
(2Fe-2S)-binding domain protein {ECO:0000313|EMBL:ABS64569.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_1712_curated_26
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21878..22687
DNA (810bp) protein (270aa)
carbon monoxide dehydrogenase medium subunit, coxM-like protein; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Putative carbon monoxide dehydrogenase medium subunit, coxM-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2V8_POLGS
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_cont_300_bf_scaffold_1712_curated_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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22699..22917
DNA (219bp) protein (73aa)
Xanthine dehydrogenase accessory factor, putative subfamily n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IVA8_POLGS
xanthine dehydrogenase accessory factor subfamily
Xanthine dehydrogenase accessory factor, putative subfamily {ECO:0000313|EMBL:ADZ72626.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Displaying 27 items

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