ggKbase home page

SCNpilot_cont_300_bf_scaffold_3063_curated

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3063_curated_1
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..211
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000366C30D
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_3063_curated_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

198..842
DNA (645bp) protein (215aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG80_AZOBR
gidB; glucose inhibited division protein B; Methyltransferase gidB
SCNpilot_cont_300_bf_scaffold_3063_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

835..1668
DNA (834bp) protein (278aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSL3_PARL1
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ABS62896.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_3063_curated_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1665..2525
DNA (861bp) protein (287aa)
ParB-like partition protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSL4_PARL1
parB-like partition protein; K03497 chromosome partitioning protein, ParB family
ParB-like partition protein {ECO:0000313|EMBL:ABS62897.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_3063_curated_5
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2688..3416)
DNA (729bp) protein (243aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=2 Tax=Acidiphilium RepID=F0IYF0_ACIMA
SCNpilot_cont_300_bf_scaffold_3063_curated_6
unknown

Not on your lists

3648..4091
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3063_curated_7
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

4210..4635
DNA (426bp) protein (142aa)
Acetyltransferase n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RDE0_9CYAN
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AFY55486.1}; TaxID=373994 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
SCNpilot_cont_300_bf_scaffold_3063_curated_8
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4642..5607)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003693AD0
Uncharacterized protein {ECO:0000313|EMBL:GAN77396.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
cytochrome c oxidase caa3-type, assembly factor CtaG-like protein; K02351 putative membrane protein
SCNpilot_cont_300_bf_scaffold_3063_curated_9
RIFOXYA1_FULL_Chromatiales_46_5_curated, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5749..6315)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Colwellia piezophila RepID=UPI000371C489
Tax=RIFOXYA1_FULL_Chromatiales_46_5_curated
SCNpilot_cont_300_bf_scaffold_3063_curated_10
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6402..6710)
DNA (309bp) protein (103aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
Elongation factor 4 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I0A8_RHOVT
GTP-binding protein LepA; K03596 GTP-binding protein LepA
Displaying 10 items

View Taxonomy