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SCNpilot_cont_300_bf_scaffold_1728_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1728_curated_1
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1255)
DNA (1254bp) protein (418aa)
polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
polynucleotide phosphorylase n=1 Tax=Methylopila sp. M107 RepID=UPI000362CFC9
SCNpilot_cont_300_bf_scaffold_1728_curated_2
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1400..1669)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=11 Tax=Brucella abortus RepID=N7BDR2_BRUAO
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_300_bf_scaffold_1728_curated_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1677..2627)
DNA (951bp) protein (317aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
truB; tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=alpha proteobacterium BAL199 RepID=A8TYZ8_9PROT
SCNpilot_cont_300_bf_scaffold_1728_curated_4
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2617..3066)
DNA (450bp) protein (150aa)
Ribosome-binding factor A n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RBFA_PHEZH
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_1728_curated_5
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3075..4733)
DNA (1659bp) protein (553aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036FE442
sulfotransferase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_1728_curated_6
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4769..7360)
DNA (2592bp) protein (864aa)
translation initiation factor IF-2 n=1 Tax=Methylocystis parvus RepID=UPI0002F7349E
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
infB; translation initiation factor IF-2
SCNpilot_cont_300_bf_scaffold_1728_curated_7
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7370..8161)
DNA (792bp) protein (264aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RC56_PHEZH
hypothetical protein; K07742 hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_1728_curated_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8158..9780)
DNA (1623bp) protein (541aa)
NusA antitermination factor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ91_PARL1
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NusA antitermination factor; K02600 N utilization substance protein A
SCNpilot_cont_300_bf_scaffold_1728_curated_9
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(9829..10314)
DNA (486bp) protein (162aa)
Ribosome maturation factor RimP n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TEQ0_PARBH
hypothetical protein; K09748 ribosome maturation factor RimP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
SCNpilot_cont_300_bf_scaffold_1728_curated_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10486..10908)
DNA (423bp) protein (141aa)
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=2 Tax=Rhodospirillum rubrum RepID=TRMB_RHORT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 10 items

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