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SCNpilot_cont_300_bf_scaffold_3238_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3238_curated_1
unknown

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3..86
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3238_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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178..2220
DNA (2043bp) protein (681aa)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:ABS61631.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ABS61631.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Penicillin-binding protein, 1A family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HNZ8_PARL1
1A family penicillin-binding protein
SCNpilot_cont_300_bf_scaffold_3238_curated_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2240..3004)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP00_PARL1
hypothetical protein; K07043
Uncharacterized protein {ECO:0000313|EMBL:ABS61633.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_3238_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3544..4032
DNA (489bp) protein (163aa)
disulfide bond formation protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B44C31
disulfide bond formation protein DsbB-like protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_3238_curated_5
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4029..4646
DNA (618bp) protein (206aa)
Ubiquinone biosynthesis protein COQ7; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-]
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
Ubiquinone biosynthesis protein COQ7 n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SKN8_RHOPH
SCNpilot_cont_300_bf_scaffold_3238_curated_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4676..5344
DNA (669bp) protein (223aa)
Puromycin N-acetyltransferase, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IQH0_RHOCS
Uncharacterized protein {ECO:0000313|EMBL:KJC60059.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
pac; puromycin N-acetyltransferase
SCNpilot_cont_300_bf_scaffold_3238_curated_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5317..5877)
DNA (561bp) protein (187aa)
Putative endonuclease n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFG4_HYPSM
endonuclease
Putative endonuclease {ECO:0000313|EMBL:CCB67920.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_3238_curated_8
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5980..6672)
DNA (693bp) protein (231aa)
Phospholipase/Carboxylesterase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTL8_PARL1
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:ABS63251.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_3238_curated_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6672..7364)
DNA (693bp) protein (231aa)
DNA-3-methyladenine glycosylase II {ECO:0000313|EMBL:CDO59233.1}; EC=3.2.2.21 {ECO:0000313|EMBL:CDO59233.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
HhH-GPD family protein; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
DNA-3-methyladenine glycosylase II n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RFJ4_9RHIZ
SCNpilot_cont_300_bf_scaffold_3238_curated_10
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7747..8169
DNA (423bp) protein (141aa)
glutamyl-tRNA synthetase (EC:6.1.1.17); K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
Glutamyl-tRNA synthetase, class Ic n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TXK1_9PROT
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_300_bf_scaffold_3238_curated_11
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8233..10203)
DNA (1971bp) protein (657aa)
protein meaA n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370B647
ecm; ethylmalonyl-CoA mutase; K14447 (2R)-ethylmalonyl-CoA mutase
Ethylmalonyl-CoA mutase {ECO:0000313|EMBL:CCB63336.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_3238_curated_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10415..10699
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA21_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG79525.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_3238_curated_13
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10885..12165
DNA (1281bp) protein (427aa)
crotonyl-CoA reductase; K14446 crotonyl-CoA carboxylase/reductase [EC:1.3.1.85]
Crotonyl-CoA reductase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZQ8_RHOVT
Crotonyl-CoA carboxylase/reductase, ethylmalonyl-CoA producing {ECO:0000313|EMBL:BAQ18761.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
SCNpilot_cont_300_bf_scaffold_3238_curated_14
unknown

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12190..12615
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3238_curated_15
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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12668..12904
DNA (237bp) protein (79aa)
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
Displaying 15 items

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