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SCNpilot_cont_300_bf_scaffold_3116_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3116_curated_1
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..234)
DNA (234bp) protein (78aa)
glutamate-1-semialdehyde aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002F432A2
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_3116_curated_2
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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957..1343
DNA (387bp) protein (129aa)
hypothetical protein n=2 Tax=Caulobacter RepID=UPI00035E21ED
Sugar kinase, ribokinase {ECO:0000313|EMBL:ENZ82913.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
sugar kinase
SCNpilot_cont_300_bf_scaffold_3116_curated_3
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1330..1983
DNA (654bp) protein (218aa)
class II aldolase/adducin, N-terminal; K01628 L-fuculose-phosphate aldolase [EC:4.1.2.17]
Class II aldolase/adducin, N-terminal n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RE85_PHEZH
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_300_bf_scaffold_3116_curated_4
Sphingopyxis macrogoltabida, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2016..3257
DNA (1242bp) protein (414aa)
FumA n=1 Tax=Sphingopyxis macrogoltabida RepID=D2D3B3_SPHMC
FumA {ECO:0000313|EMBL:ACS27053.1}; TaxID=33050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3116_curated_5
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4573..4908)
DNA (336bp) protein (112aa)
UPI0003CFA557 related cluster n=1 Tax=unknown RepID=UPI0003CFA557
Uncharacterized protein {ECO:0000313|EMBL:ESZ77685.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
SCNpilot_cont_300_bf_scaffold_3116_curated_6
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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5181..6044
DNA (864bp) protein (288aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGP0_PARBH
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_300_bf_scaffold_3116_curated_7].
SCNpilot_cont_300_bf_scaffold_3116_curated_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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6052..7221
DNA (1170bp) protein (390aa)
ATP phosphoribosyltransferase regulatory subunit {ECO:0000313|EMBL:CDO60348.1}; EC=2.4.2.17 {ECO:0000313|EMBL:CDO60348.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Histidine--tRNA ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQN9_PARL1
hisZ; ATP phosphoribosyltransferase regulatory subunit; K02502 ATP phosphoribosyltransferase regulatory subunit
SCNpilot_cont_300_bf_scaffold_3116_curated_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7224..8201
DNA (978bp) protein (326aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hisG; ATP phosphoribosyltransferase; K00765 ATP phosphoribosyltransferase [EC:2.4.2.17]
ATP phosphoribosyltransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E6E66A
SCNpilot_cont_300_bf_scaffold_3116_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8207..9400)
DNA (1194bp) protein (398aa)
Selenocysteine lyase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YV47_9RHIZ
Selenocysteine lyase {ECO:0000313|EMBL:EIM27839.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_3116_curated_10
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9340..10707)
DNA (1368bp) protein (456aa)
Ste24 endopeptidase (EC:3.4.24.84); K06013 STE24 endopeptidase [EC:3.4.24.84]
Ste24 endopeptidase {ECO:0000313|EMBL:ACY18025.1}; EC=3.4.24.84 {ECO:0000313|EMBL:ACY18025.1};; Flags: Precursor;; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
Ste24 endopeptidase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZP6_HALO1
SCNpilot_cont_300_bf_scaffold_3116_curated_11
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10814..11530
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FXW9_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL73356.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
Displaying 11 items

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