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SCNpilot_expt_1000_bf_scaffold_3439_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3439_curated_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..867)
DNA (867bp) protein (289aa)
xseA; exonuclease VII, large subunit OB-fold nucleic acid binding domain (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIN6_HYPSM
SCNpilot_expt_1000_bf_scaffold_3439_curated_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1029..2321
DNA (1293bp) protein (431aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
phosphoribosylamine/glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCZ0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3439_curated_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2318..3229
DNA (912bp) protein (304aa)
hydrolase; K01561 haloacetate dehalogenase [EC:3.8.1.3]
Predicted hydrolase or acyltransferase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J008_POLGS
Predicted hydrolase or acyltransferase {ECO:0000313|EMBL:ADZ71843.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_3439_curated_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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3232..4149
DNA (918bp) protein (306aa)
hydrolase; K01561 haloacetate dehalogenase [EC:3.8.1.3]
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037FF7E2
Predicted hydrolase or acyltransferase {ECO:0000313|EMBL:ADZ71843.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_3439_curated_5
unknown

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4170..5183
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003796C1D
patatin; K07001 NTE family protein
Patatin {ECO:0000313|EMBL:CPR14989.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3439_curated_6
unknown

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5186..6067
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003796C1D
Patatin {ECO:0000313|EMBL:CPR14989.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
patatin; K07001 NTE family protein
SCNpilot_expt_1000_bf_scaffold_3439_curated_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6043..6459)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YSS6_9RHIZ
2Fe-2S ferredoxin {ECO:0000313|EMBL:ETR77282.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative ferredoxin
SCNpilot_expt_1000_bf_scaffold_3439_curated_8
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6503..7633)
DNA (1131bp) protein (377aa)
hydrolase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E3B9C2
Hydrolase {ECO:0000313|EMBL:KFL25929.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3439_curated_9
unknown

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comp(9082..9264)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3439_curated_10
unknown

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9745..10317
DNA (573bp) protein (191aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3439_curated_11
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10886..11227)
DNA (342bp) protein (114aa)
Putative transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM92_9RHIZ
ArsR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_expt_1000_bf_scaffold_3439_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11257..11739
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YM93_9RHIZ
ATPase {ECO:0000313|EMBL:KGE01037.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3439_curated_13
unknown

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comp(11764..12261)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000364489A
Uncharacterized protein {ECO:0000313|EMBL:CPR19014.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_3439_curated_14
unknown

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comp(12345..13295)
DNA (951bp) protein (317aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
fmt; 10-formyltetrahydrofolate: L-methionyl-tRNA(fMet)N-formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC06_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3439_curated_15
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13341..13901)
DNA (561bp) protein (187aa)
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Peptide deformylase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBI2_HYPSM
SCNpilot_expt_1000_bf_scaffold_3439_curated_16
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14005..15249
DNA (1245bp) protein (415aa)
30S ribosomal protein S6 modification protein n=1 Tax=Woodsholea maritima RepID=UPI00036E2D5F
Uncharacterized protein {ECO:0000313|EMBL:KCZ49866.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
ribosomal protein S6 modification protein; K05844 ribosomal protein S6 modification protein
SCNpilot_expt_1000_bf_scaffold_3439_curated_17
unknown

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15382..15444
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 17 items

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