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SCNpilot_expt_1000_bf_scaffold_6729_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6729_curated_1
unknown

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comp(1..354)
DNA (354bp) protein (118aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000364521B
Glutathione S-transferase {ECO:0000313|EMBL:CPR18257.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_6729_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1037..2089)
DNA (1053bp) protein (351aa)
MaoC domain protein dehydratase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFN1_METNO
Acyl dehydratase {ECO:0000313|EMBL:EIM27657.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
MaoC domain-containing protein dehydratase
SCNpilot_expt_1000_bf_scaffold_6729_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2201..3427)
DNA (1227bp) protein (409aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Regulatory protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCD1_9RHIZ
5-aminolevulinic acid synthase
SCNpilot_expt_1000_bf_scaffold_6729_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3656..4867
DNA (1212bp) protein (404aa)
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378E4B6
Ubiquinone biosynthesis protein UbiH {ECO:0000313|EMBL:AHB49266.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_6729_curated_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5009..5347
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B48958
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_6729_curated_6
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5716..6000)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036F796C
putative phage repressor
Phage repressor {ECO:0000313|EMBL:GAM98330.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
SCNpilot_expt_1000_bf_scaffold_6729_curated_7
unknown

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6203..6463
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6729_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6528..6902
DNA (375bp) protein (125aa)
glutathione S-transferase n=1 Tax=Methylocystis rosea RepID=UPI0003791BB8
Uncharacterized protein {ECO:0000313|EMBL:EKF44557.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6729_curated_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6902..7999
DNA (1098bp) protein (366aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
dihydroorotate dehydrogenase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Diguanylate cyclase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9M5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6729_curated_10
unknown

Not on your lists

comp(8003..9352)
DNA (1350bp) protein (450aa)
MATE efflux family protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I0T5_RHOVT
DNA-damage-inducible protein F {ECO:0000313|EMBL:CPR18632.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
SCNpilot_expt_1000_bf_scaffold_6729_curated_11
unknown

Not on your lists

comp(9422..9703)
DNA (282bp) protein (94aa)
Membrane protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S8T2_9RHIZ
Membrane protein {ECO:0000313|EMBL:CPR18630.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6729_curated_12
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10165..11781
DNA (1617bp) protein (539aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JRS9_HYPDA
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADJ24147.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_6729_curated_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11838..12152)
DNA (315bp) protein (105aa)
Histone family protein DNA-binding protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPG5_HYPDA
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone family protein DNA-binding protein {ECO:0000313|EMBL:ADJ21856.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
Displaying 13 items

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