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SCNpilot_expt_1000_bf_scaffold_2500_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2500_curated_1
unknown

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comp(2..172)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2500_curated_2
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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223..807
DNA (585bp) protein (195aa)
Hexapeptide repeat-containing transferase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SHY9_9BURK
Hexapeptide repeat-containing transferase {ECO:0000313|EMBL:EHP37914.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
hexapaptide repeat-containing transferase
SCNpilot_expt_1000_bf_scaffold_2500_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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891..1718
DNA (828bp) protein (276aa)
Ribonuclease BN n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGW1_9RHIZ
Ribonuclease BN {ECO:0000313|EMBL:AHB49768.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ribonuclease BN; K07058 membrane protein
SCNpilot_expt_1000_bf_scaffold_2500_curated_4
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1744..2106
DNA (363bp) protein (121aa)
tRNA-binding protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037ED299
tRNA-binding protein {ECO:0000313|EMBL:ESX62939.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC422A00.;"
csaA; Secretion chaperone CsaA; K06878 tRNA-binding protein
SCNpilot_expt_1000_bf_scaffold_2500_curated_5
unknown

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comp(2160..2411)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2500_curated_6
unknown

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comp(2613..2873)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2500_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3023..4456)
DNA (1434bp) protein (478aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037B957E
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2500_curated_8
unknown

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comp(4510..5226)
DNA (717bp) protein (239aa)
Winged helix family two component transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BEF2_9RHIZ
DNA-binding response regulator in two-component regulatory system with EnvZ {ECO:0000313|EMBL:CPR20083.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
winged helix family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2500_curated_9
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5223..5804)
DNA (582bp) protein (194aa)
HTH-type transcriptional regulator PetP n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RAJ9_9RHIZ
HTH-type transcriptional regulator PetP {ECO:0000313|EMBL:ESR23206.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2500_curated_10
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6725..6997
DNA (273bp) protein (91aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KJC58339.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KJC58339.1};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Branched-chain amino acid aminotransferase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IFK6_BEII9
SCNpilot_expt_1000_bf_scaffold_2500_curated_11
unknown

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7167..7613
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003651053
SCNpilot_expt_1000_bf_scaffold_2500_curated_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7773..8564)
DNA (792bp) protein (264aa)
carbon monoxide dehydrogenase medium subunit; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Molybdopterin dehydrogenase FAD-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KJY7_9PROT
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:KGM34026.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_1000_bf_scaffold_2500_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8576..9745)
DNA (1170bp) protein (390aa)
carbon-monoxide dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EEECE0
Carbon-monoxide dehydrogenase, large subunit {ECO:0000313|EMBL:KFC67625.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
aldehyde oxidase/xanthine dehydrogenase
Displaying 13 items

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