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SCNpilot_expt_1000_bf_scaffold_12059_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_12059_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..514
DNA (513bp) protein (171aa)
ATP-dependent protease n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003715961
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_expt_1000_bf_scaffold_12059_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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805..2568
DNA (1764bp) protein (588aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Lon protease n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBD3_9RHIZ
ATP-dependent protease La
SCNpilot_expt_1000_bf_scaffold_12059_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2535..3194
DNA (660bp) protein (220aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Peptidase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCN8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_12059_curated_4
unknown

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3504..3776
DNA (273bp) protein (91aa)
transcriptional regulator n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003719132
HU, DNA-binding transcriptional regulator, beta subunit (Modular protein) {ECO:0000313|EMBL:CPR20907.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hupB; DNA-binding protein HU-beta; K03530 DNA-binding protein HU-beta
SCNpilot_expt_1000_bf_scaffold_12059_curated_5
Rhodobacteraceae bacterium HIMB11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3997..4794
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI000373743A
Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin {ECO:0000313|EMBL:ERL98584.1}; TaxID=1366046 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HIMB11.;"
phytanoyl-CoA dioxygenase
SCNpilot_expt_1000_bf_scaffold_12059_curated_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4791..5255)
DNA (465bp) protein (155aa)
rRNA methylase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JEY5_HYPSM
SCNpilot_expt_1000_bf_scaffold_12059_curated_7
unknown

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5440..5631
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12059_curated_8
unknown

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5628..6218
DNA (591bp) protein (197aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494, ECO:0000313|EMBL:CPR20002.1}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494, ECO:0000313|EMBL:CPR20002.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ubiquinol-cytochrome C reductase, iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
ubiquinol-cytochrome C reductase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003663771
SCNpilot_expt_1000_bf_scaffold_12059_curated_9
unknown

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6235..7512
DNA (1278bp) protein (426aa)
cytochrome B n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036608D8
Cytochrome b {ECO:0000256|RuleBase:RU003385, ECO:0000313|EMBL:CPR20004.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cytochrome b/b6 domain-containing protein; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
SCNpilot_expt_1000_bf_scaffold_12059_curated_10
unknown

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7531..7956
DNA (426bp) protein (142aa)
Cytochrome C n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHG2_9RHIZ
Cytochrome c1 {ECO:0000313|EMBL:CPR20006.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cytochrome b/c1
SCNpilot_expt_1000_bf_scaffold_12059_curated_11
unknown

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comp(8150..8293)
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12059_curated_12
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8760..8963)
DNA (204bp) protein (68aa)
transketolase central region; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Transketolase central region n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IB78_BEII9
SCNpilot_expt_1000_bf_scaffold_12059_curated_13
unknown

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9370..9537
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying 13 items

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