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SCNpilot_expt_1000_bf_scaffold_1387_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1387_curated_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1725)
DNA (1725bp) protein (575aa)
Methionine synthase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCJ3_9RHIZ
methionine synthase
Methionine synthase {ECO:0000313|EMBL:AGK57840.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_1387_curated_2
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1966..2142)
DNA (177bp) protein (59aa)
Component of type 4 pilus pilin subunit protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JYP3_AGRVS
Flp/Fap pilin component (Modular protein) {ECO:0000313|EMBL:KFC61315.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
ctpA; component of type 4 pilus pilin subunit protein; K02651 pilus assembly protein Flp/PilA
SCNpilot_expt_1000_bf_scaffold_1387_curated_3
unknown

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comp(2644..3360)
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1387_curated_4
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3836..4207
DNA (372bp) protein (124aa)
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I1I5_9BRAD
hypothetical protein; K06890
Uncharacterized protein {ECO:0000313|EMBL:KJC49447.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_expt_1000_bf_scaffold_1387_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4761..5795)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037CC09B
Uncharacterized protein {ECO:0000313|EMBL:AHB47939.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1387_curated_6
unknown

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comp(5802..5957)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1387_curated_7
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5985..6764)
DNA (780bp) protein (260aa)
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BHY4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1387_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6831..7013)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSP5_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24339.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_1387_curated_9
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7192..7617
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IC13_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65556.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_1387_curated_10
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7490..8101)
DNA (612bp) protein (204aa)
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_1000_bf_scaffold_1387_curated_11
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8555..9328
DNA (774bp) protein (258aa)
enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
Enoyl-CoA hydratase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IQN3_AZOC5
Enoyl-CoA hydratase {ECO:0000313|EMBL:BAF86800.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_1387_curated_12
unknown

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9553..10206
DNA (654bp) protein (218aa)
Ribosome maturation factor RimP n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JD73_HYPSM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_expt_1000_bf_scaffold_1387_curated_13
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10220..11875
DNA (1656bp) protein (552aa)
Transcription elongation factor NusA n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SCP8_9RHIZ
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
nusA; transcription elongation protein; K02600 N utilization substance protein A
SCNpilot_expt_1000_bf_scaffold_1387_curated_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11940..12650
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037D00B2
Uncharacterized protein {ECO:0000313|EMBL:AHB48289.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1387_curated_15
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12647..15292
DNA (2646bp) protein (882aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370FD9D
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
infB; translation initiation factor IF-2
SCNpilot_expt_1000_bf_scaffold_1387_curated_16
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15484..15858
DNA (375bp) protein (125aa)
Ribosome-binding factor A n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFL0_HYPSM
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1387_curated_17
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15860..16783
DNA (924bp) protein (308aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.-); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
tRNA pseudouridine synthase B n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFK9_HYPSM
SCNpilot_expt_1000_bf_scaffold_1387_curated_18
unknown

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comp(17113..19704)
DNA (2592bp) protein (864aa)
Penicillin-binding protein 1A {ECO:0000313|EMBL:CPR14691.1}; EC=2.4.2.- {ECO:0000313|EMBL:CPR14691.1};; EC=3.4.-.- {ECO:0000313|EMBL:CPR14691.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000373BDAE
penicillin-binding protein 1A
SCNpilot_expt_1000_bf_scaffold_1387_curated_19
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19987..20382
DNA (396bp) protein (132aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=2 Tax=Bordetella holmesii RepID=M5NS44_9BORD
Carboxymuconolactone decarboxylase family protein {ECO:0000313|EMBL:KAK84311.1}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii CDC-H809-BH.;"
SCNpilot_expt_1000_bf_scaffold_1387_curated_20
unknown

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20940..21059
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1387_curated_21
unknown

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comp(21929..22282)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1387_curated_22
unknown

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23182..23697
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1387_curated_23
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23815..24051)
DNA (237bp) protein (79aa)
beta-lactamase (EC:3.5.2.6); K01467 beta-lactamase [EC:3.5.2.6]
Beta-lactamase {ECO:0000256|RuleBase:RU361140}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140};; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
Beta-lactamase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B947_STRRD
Displaying 23 items

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