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SCNpilot_expt_1000_bf_scaffold_7261_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7261_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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425..667
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SJV7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB50264.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_7261_curated_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1534..2385
DNA (852bp) protein (284aa)
Propionyl-CoA carboxylase beta chain id=2476248 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
propionyl-CoA carboxylase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_7261_curated_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2535..5024)
DNA (2490bp) protein (830aa)
N,N-dimethylformamidase large subunit (EC:3.5.1.56); K03418 N,N-dimethylformamidase [EC:3.5.1.56]
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI00035DDDEE
Probable N,N-dimethylformamidase large subunit {ECO:0000313|EMBL:EDP66954.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
SCNpilot_expt_1000_bf_scaffold_7261_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5194..6189
DNA (996bp) protein (332aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=alpha proteobacterium BAL199 RepID=A8TKG9_9PROT
dctP; TRAP dicarboxylate transporter subunit DctP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_7261_curated_5
unknown

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comp(6284..6493)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7261_curated_6
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6518..8128)
DNA (1611bp) protein (537aa)
TRAP C4-dicarboxylate transport system permease DctM n=1 Tax=Oceanibaculum indicum P24 RepID=K2KDD6_9PROT
TRAP C4-dicarboxylate transport system permease DctM {ECO:0000313|EMBL:EKE75325.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
TRAP C4-dicarboxylate transport system permease DctM
SCNpilot_expt_1000_bf_scaffold_7261_curated_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8167..8715)
DNA (549bp) protein (183aa)
TRAP transporter, DctQ-like membrane protein, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMY2_RHOCS
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KJB91724.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
TRAP transporter DctQ-like membrane protein
SCNpilot_expt_1000_bf_scaffold_7261_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8933..9628)
DNA (696bp) protein (232aa)
Phosphoglycolate phosphatase {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902}; Short=PGP {ECO:0000256|HAMAP-Rule:MF_00495};; Short=PGPase {ECO:0000256|HAMAP-Rule:MF_00495};; EC=3.1.3.18 {ECO:0000256|HAMAP-Rule:MF_00495, ECO:0000256|SAAS:SAAS00077902};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
gph; phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXU8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7261_curated_9
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9625..9795)
DNA (171bp) protein (57aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3]
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Phosphoglycerate kinase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBP9_HYPSM
SCNpilot_expt_1000_bf_scaffold_7261_curated_10
unknown

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10131..10298
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7261_curated_11
unknown

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11043..11870
DNA (828bp) protein (276aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CPR16687.1}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:CPR16687.1};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
map; methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JEU0_HYPSM
SCNpilot_expt_1000_bf_scaffold_7261_curated_12
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11903..12673
DNA (771bp) protein (257aa)
DNA repair protein RadC n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD55_9RHIZ
DNA repair protein RadC {ECO:0000313|EMBL:AHB47995.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
radC; DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_expt_1000_bf_scaffold_7261_curated_13
bacterium YEK0313, Bacteria

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comp(12666..13979)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2Y2_9PROT
Major Facilitator Superfamily protein {ECO:0000313|EMBL:CEJ15702.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7261_curated_14
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14418..14765
DNA (348bp) protein (116aa)
Transcriptional regulator, ArsR family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2Y1_9PROT
Transcriptional regulator, ArsR family protein {ECO:0000313|EMBL:EDP61491.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7261_curated_15
unknown

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comp(14762..16150)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CBCAD
Uncharacterized protein {ECO:0000313|EMBL:CPR20466.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
Displaying 15 items

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