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SCNpilot_expt_1000_bf_scaffold_5329_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5329_curated_1
unknown

Not on your lists

comp(103..228)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_2
unknown

Not on your lists

comp(250..546)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_3
unknown

Not on your lists

comp(568..867)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_4
unknown

Not on your lists

1475..1828
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:CPR22391.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_5329_curated_5
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1850..2170
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I514_RHOVT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KAI95988.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_expt_1000_bf_scaffold_5329_curated_6
unknown

Not on your lists

2346..2522
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BGN1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR22390.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5329_curated_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2582..2893)
DNA (312bp) protein (104aa)
hypothetical protein id=14626773 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
SCNpilot_expt_1000_bf_scaffold_5329_curated_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2964..3215)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J6L4_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB65186.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5329_curated_9
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3212..4207)
DNA (996bp) protein (332aa)
monooxygenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003803B91
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family {ECO:0000313|EMBL:EIG59326.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
nitrilotriacetate monooxygenase component A
SCNpilot_expt_1000_bf_scaffold_5329_curated_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4843..5838
DNA (996bp) protein (332aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11)
Fructose-1,6-bisphosphatase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2B8_9RHIZ
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5329_curated_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6113..6730)
DNA (618bp) protein (206aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TMR8_9BRAD
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:CCE07756.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
lysine exporter protein
SCNpilot_expt_1000_bf_scaffold_5329_curated_12
unknown

Not on your lists

7436..8488
DNA (1053bp) protein (351aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_13
unknown

Not on your lists

8507..9094
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_14
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9213..10406
DNA (1194bp) protein (398aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Acidovorax sp. CF316 RepID=J1EQF8_9BURK
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJE54456.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5329_curated_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10650..12527
DNA (1878bp) protein (626aa)
Putative permease component of branched-chain amino acid transport system n=1 Tax=Bordetella bronchiseptica D445 RepID=K4THF4_BORBO
branched-chain amino acid ABCtransporter permease; K01997 branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_5329_curated_16
unknown

Not on your lists

comp(12416..12700)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_17
unknown

Not on your lists

comp(12697..12927)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_18
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13294..13998
DNA (705bp) protein (235aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Burkholderia sp. BT03 RepID=J2HGR5_9BURK
ABC transporter related protein {ECO:0000313|EMBL:EUC16115.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
livF; branched-chain amino acid transport system ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_5329_curated_19
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14023..14556)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB49434.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5329_curated_20
unknown

Not on your lists

14771..15535
DNA (765bp) protein (255aa)
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cobB; NAD-dependent protein deacetylase (EC:3.5.1.-); K12410 NAD-dependent deacetylase [EC:3.5.1.-]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036B9E73
SCNpilot_expt_1000_bf_scaffold_5329_curated_21
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15677..16396
DNA (720bp) protein (240aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000360D187
ribose 5-phosphate isomerase
SCNpilot_expt_1000_bf_scaffold_5329_curated_22
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16434..16931
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037300F4
conserved exported hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86327.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_5329_curated_23
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16941..18323
DNA (1383bp) protein (461aa)
Glutathione-disulfide reductase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B6N3_9RHIZ
glutathione-disulfide reductase
Glutathione-disulfide reductase {ECO:0000313|EMBL:AGK57887.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5329_curated_24
unknown

Not on your lists

comp(18815..19063)
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_25
unknown

Not on your lists

19302..19508
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_26
unknown

Not on your lists

20358..20528
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_27
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21253..21876
DNA (624bp) protein (208aa)
lysine transporter LysE n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039A60D6
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:EKE69506.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_5329_curated_28
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21920..22711
DNA (792bp) protein (264aa)
enoyl-CoA hydratase; K13766 methylglutaconyl-CoA hydratase [EC:4.2.1.18]
Methylglutaconyl-CoA hydratase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IES7_9BRAD
Methylglutaconyl-CoA hydratase {ECO:0000313|EMBL:ERF80944.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_expt_1000_bf_scaffold_5329_curated_29
unknown

Not on your lists

22794..23186
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5329_curated_30
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23497..24168
DNA (672bp) protein (224aa)
transcriptional regulator n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037CCD15
Transcriptional regulator {ECO:0000313|EMBL:AHB49032.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
DNA-binding response regulator in two-component regulatory system
Displaying items 1-30 of 31 in total

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