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SCNpilot_expt_1000_bf_scaffold_5395_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5395_curated_1
unknown

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3..302
DNA (300bp) protein (100aa)
molybdopterin biosynthesis MoaE protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
molybdenum cofactor biosynthesis protein MoaE n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D8F49D
Molybdopterin synthase, large subunit {ECO:0000313|EMBL:CPR14801.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_5395_curated_2
unknown

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997..1599
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_curated_3
unknown

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1624..2157
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_curated_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2175..2444)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SHY4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB49660.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5395_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2626..3672)
DNA (1047bp) protein (349aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
16S rRNA methyltransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SI88_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5395_curated_6
unknown

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comp(3669..4178)
DNA (510bp) protein (170aa)
Cell division protein MraZ n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGJ7_9RHIZ
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
MraZ domain-containing protein; K03925 MraZ protein
SCNpilot_expt_1000_bf_scaffold_5395_curated_7
unknown

Not on your lists

comp(4462..4581)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_curated_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4663..5337
DNA (675bp) protein (225aa)
rpe; D-ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
ribulose-phosphate 3-epimerase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037B482C
SCNpilot_expt_1000_bf_scaffold_5395_curated_9
unknown

Not on your lists

comp(5585..6100)
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_curated_10
unknown

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comp(6305..6730)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5395_curated_11
unknown

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comp(7728..9983)
DNA (2256bp) protein (752aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036719F5
Uncharacterized protein {ECO:0000313|EMBL:CPR20450.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_expt_1000_bf_scaffold_5395_curated_12
unknown

Not on your lists

10387..12015
DNA (1629bp) protein (543aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Acyl-CoA synthetase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SE14_9RHIZ
Acyl-CoA synthetase {ECO:0000313|EMBL:CPR14940.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_5395_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12102..12794
DNA (693bp) protein (231aa)
short-chain alcohol dehydrogenase/3-hydroxy-2-methylbutyryl-CoA dehydrogenase (EC:1.1.1.178)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM25303.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Displaying 13 items

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