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SCNpilot_expt_1000_bf_scaffold_4249_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4249_curated_1
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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247..585
DNA (339bp) protein (113aa)
4Fe-4S ferredoxin n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBP7_9RHIZ
4Fe-4S ferredoxin {ECO:0000313|EMBL:AHB47394.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; K05524 ferredoxin
SCNpilot_expt_1000_bf_scaffold_4249_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1085..2272
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368756B
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
Transcriptional regulator, CarD family {ECO:0000313|EMBL:CCB67614.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_4249_curated_3
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2363..2704)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002DAC6C5
Uncharacterized protein {ECO:0000313|EMBL:EQM65989.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
HxlR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4249_curated_4
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2766..3320
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RNL7_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EPX95281.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
carboxymuconolactone decarboxylase
SCNpilot_expt_1000_bf_scaffold_4249_curated_5
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3336..4727)
DNA (1392bp) protein (464aa)
flavin-containing monooxygenase (EC:1.14.13.8)
Flavin-containing monooxygenase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIP3_RHOM4
Putative flavin-containing monooxygenase {ECO:0000313|EMBL:GAF50211.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
SCNpilot_expt_1000_bf_scaffold_4249_curated_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4835..5293)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JM44_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KGM35774.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4249_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5353..5874)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLU2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC66565.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K09004 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4249_curated_8
unknown

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comp(5991..6545)
DNA (555bp) protein (185aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000378789D
SCNpilot_expt_1000_bf_scaffold_4249_curated_9
unknown

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comp(6579..6722)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 9 items

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