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SCNpilot_expt_1000_bf_scaffold_9330_curated

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9330_curated_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..525)
DNA (525bp) protein (175aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Coproporphyrinogen-III oxidase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBI9_9RHOB
SCNpilot_expt_1000_bf_scaffold_9330_curated_2
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(595..1200)
DNA (606bp) protein (202aa)
sarcosine oxidase gamma subunit; K00305 sarcosine oxidase, subunit gamma [EC:1.5.3.1]
Sarcosine oxidase, gamma subunit n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G2T9_9RHIZ
Sarcosine oxidase, gamma subunit {ECO:0000313|EMBL:EAU42092.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
SCNpilot_expt_1000_bf_scaffold_9330_curated_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1193..1552)
DNA (360bp) protein (120aa)
sarcosine oxidase subunit alpha; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase alpha subunit n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HXF1_AZOC5
Sarcosine oxidase alpha subunit {ECO:0000313|EMBL:BAF87492.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_9330_curated_4
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1552..3810)
DNA (2259bp) protein (753aa)
soxA; sarcosine oxidase, subunit alpha (EC:1.5.3.1); K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase, subunit alpha {ECO:0000313|EMBL:BAI74488.1}; EC=1.5.3.1 {ECO:0000313|EMBL:BAI74488.1};; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
Sarcosine oxidase, subunit alpha n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1F9_AZOS1
SCNpilot_expt_1000_bf_scaffold_9330_curated_5
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3915..4136)
DNA (222bp) protein (74aa)
sarcosine oxidase subunit alpha; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase, alpha subunit family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDM5_XANP2
Sarcosine oxidase, alpha subunit family {ECO:0000313|EMBL:ABS66118.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_9330_curated_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4133..4408)
DNA (276bp) protein (92aa)
soxD; sarcosine oxidase subunit delta (EC:1.5.3.1); K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase, delta subunit {ECO:0000313|EMBL:ACS39409.1}; EC=1.5.3.1 {ECO:0000313|EMBL:ACS39409.1};; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
Sarcosine oxidase, delta subunit n=2 Tax=Methylobacterium extorquens RepID=C5B059_METEA
SCNpilot_expt_1000_bf_scaffold_9330_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4420..5670)
DNA (1251bp) protein (417aa)
Sarcosine oxidase, beta subunit {ECO:0000313|EMBL:KFC75720.1}; EC=1.5.3.1 {ECO:0000313|EMBL:KFC75720.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
sarcosine oxidase subunit beta; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
sarcosine oxidase subunit beta n=1 Tax=Elioraea tepidiphila RepID=UPI000373AD7A
SCNpilot_expt_1000_bf_scaffold_9330_curated_8
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5824..6510
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UHE0_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA19366.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_9330_curated_9
unknown

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comp(6526..7731)
DNA (1206bp) protein (402aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9330_curated_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8049..8234
DNA (186bp) protein (62aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035C74BD
leucyl/phenylalanyl-tRNA/protein transferase
Displaying 10 items

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