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SCNpilot_expt_1000_bf_scaffold_1853_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1853_curated_1
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..588)
DNA (588bp) protein (196aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037A27B7
hypothetical protein
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EIG58942.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_1853_curated_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(619..1227)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D7L0_BRAJP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_1853_curated_3
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1260..2243)
DNA (984bp) protein (328aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8APG5_RHIRD
C4-dicarboxylate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFI26911.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
TRAP dicarboxylate transporter subunit DctP
SCNpilot_expt_1000_bf_scaffold_1853_curated_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2392..3330
DNA (939bp) protein (313aa)
dapA; dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035D5157
Uncharacterized protein {ECO:0000313|EMBL:KJC59979.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_expt_1000_bf_scaffold_1853_curated_5
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3519..3872)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI000361FC4E
Cation:proton antiporter {ECO:0000313|EMBL:ETR77578.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
phaG; ph adaptation potassium efflux system protein G
SCNpilot_expt_1000_bf_scaffold_1853_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3895..4176)
DNA (282bp) protein (94aa)
cation:proton antiporter n=1 Tax=Xanthobacteraceae RepID=UPI00036EB376
phaF1; monovalent cation/H+ antiporter subunit F
Monovalent cation/H+ antiporter subunit F {ECO:0000313|EMBL:AGB74542.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1853_curated_7
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4173..4658)
DNA (486bp) protein (162aa)
pH adaptation potassium efflux system E transmembrane protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZDE3_AZOL4
phaE; pH adaptation potassium efflux system E transmembrane protein; K05562 multicomponent K+:H+ antiporter subunit E
pH adaptation potassium efflux system E transmembrane protein {ECO:0000313|EMBL:CBS89470.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_1853_curated_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4655..5455)
DNA (801bp) protein (267aa)
Putative monovalent cation/H+ antiporter subunit D n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A335_9PROT
Putative monovalent cation/H+ antiporter subunit D {ECO:0000313|EMBL:EHL99465.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
phaD; multisubunit K+/H+ antiporter subunit D
SCNpilot_expt_1000_bf_scaffold_1853_curated_9
unknown

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5942..6271
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1853_curated_10
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6286..6630)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLD3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR23121.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
SCNpilot_expt_1000_bf_scaffold_1853_curated_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6630..9548)
DNA (2919bp) protein (973aa)
Tmonovalent cation:proton antiporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKY5_9RHIZ
Tmonovalent cation:proton antiporter {ECO:0000313|EMBL:EIM24627.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
NADH/ubiquinone/plastoquinone; K05559 multicomponent K+:H+ antiporter subunit A
SCNpilot_expt_1000_bf_scaffold_1853_curated_12
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9845..10336)
DNA (492bp) protein (164aa)
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SCJ1_9RHOB
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) {ECO:0000313|EMBL:EPX87840.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
nitrogen regulatory protein
SCNpilot_expt_1000_bf_scaffold_1853_curated_13
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10359..11249)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HCU6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB10792.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1853_curated_14
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(11508..12164)
DNA (657bp) protein (219aa)
Xanthine/uracil permease n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IGX0_9FIRM
Xanthine/uracil permease {ECO:0000313|EMBL:EQB25086.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
UraA; xanthine/uracil permeases
Displaying 14 items

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