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SCNpilot_expt_1000_bf_scaffold_21725_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_21725_curated_1
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..179)
DNA (177bp) protein (59aa)
UPI0003CF06BC related cluster n=1 Tax=unknown RepID=UPI0003CF06BC
Uncharacterized protein {ECO:0000313|EMBL:ESW83834.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
SCNpilot_expt_1000_bf_scaffold_21725_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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596..1216
DNA (621bp) protein (207aa)
60 kDa chaperonin n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5V0_9RHIZ
chaperonin GroEL; K04077 chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_21725_curated_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1505..2089
DNA (585bp) protein (195aa)
30S ribosomal protein S6 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JYS1_HYPDA
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_21725_curated_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2093..2374
DNA (282bp) protein (94aa)
30S ribosomal protein S18 n=2 Tax=Hyphomicrobium denitrificans RepID=D8JYS2_HYPDA
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_21725_curated_5
unknown

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3098..3424
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEB9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR21665.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_21725_curated_6
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3486..4022
DNA (537bp) protein (179aa)
50S ribosomal protein L9 n=158 Tax=Brucella RepID=RL9_BRUA1
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_expt_1000_bf_scaffold_21725_curated_7
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4279..5541
DNA (1263bp) protein (421aa)
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:BAQ17614.1}; EC=2.1.1.79 {ECO:0000313|EMBL:BAQ17614.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
cfa2; cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N599_RHOPA
SCNpilot_expt_1000_bf_scaffold_21725_curated_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5558..5845)
DNA (288bp) protein (96aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
phosphoenolpyruvate carboxykinase; K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
phosphoenolpyruvate carboxykinase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003605AE6
SCNpilot_expt_1000_bf_scaffold_21725_curated_9
unknown

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6224..6340
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 9 items

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