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SCNpilot_expt_1000_bf_scaffold_1735_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1735_curated_1
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(54..947)
DNA (894bp) protein (298aa)
hydratase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DE38E3
Putative hydratase {ECO:0000313|EMBL:EDP61814.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hydratase
SCNpilot_expt_1000_bf_scaffold_1735_curated_2
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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949..2361
DNA (1413bp) protein (471aa)
Chaperone protein HtpG n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EBL9_BRASB
htpG; heat shock protein 90; K04079 molecular chaperone HtpG
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_expt_1000_bf_scaffold_1735_curated_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2358..4433
DNA (2076bp) protein (692aa)
peptidyl-dipeptidase a protein; K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5]
Probable peptidyl-dipeptidase a protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWQ7_POLGS
Probable peptidyl-dipeptidase a protein {ECO:0000313|EMBL:ADZ70382.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_1735_curated_4
unknown

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comp(4702..5808)
DNA (1107bp) protein (369aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphapr
metalloendopeptidase, glycoprotease family (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036C34AB
SCNpilot_expt_1000_bf_scaffold_1735_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6803..7552
DNA (750bp) protein (250aa)
Uroporphyrinogen III synthase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBD5_9RHIZ
Uroporphyrinogen III synthase {ECO:0000313|EMBL:AHB47330.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
uroporphyrinogen III synthase HEM4
SCNpilot_expt_1000_bf_scaffold_1735_curated_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7644..9356
DNA (1713bp) protein (571aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375D9FF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB68026.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_1735_curated_7
unknown

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9353..10969
DNA (1617bp) protein (539aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037E1471
HemY domain protein {ECO:0000313|EMBL:CPR17260.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
HemY domain-containing protein; K02498 HemY protein
SCNpilot_expt_1000_bf_scaffold_1735_curated_8
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11030..12439)
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000374C381
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_1735_curated_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12594..13007)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JU93_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ22683.1}; Flags: Precursor;; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_1735_curated_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13278..14534
DNA (1257bp) protein (419aa)
Lytic transglycosylase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SAL2_9RHIZ
Lytic transglycosylase {ECO:0000313|EMBL:AHB47678.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Lytic murein transglycosylase
SCNpilot_expt_1000_bf_scaffold_1735_curated_11
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14537..15493)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B554_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL70648.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_1735_curated_12
unknown

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comp(15634..16014)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1735_curated_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16011..16700)
DNA (690bp) protein (230aa)
N-methyltransferase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J0E2_9RHOB
N-methyltransferase {ECO:0000313|EMBL:EJW10590.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
type 12 methyltransferase
SCNpilot_expt_1000_bf_scaffold_1735_curated_14
unknown

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comp(16785..17243)
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1735_curated_15
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17886..21707
DNA (3822bp) protein (1274aa)
NAD-glutamate dehydrogenase; K15371 glutamate dehydrogenase [EC:1.4.1.2]
NAD-specific glutamate dehydrogenase, large form n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RK40_9RHIZ
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:KFG70655.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_expt_1000_bf_scaffold_1735_curated_16
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21798..23192
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035E0CA0
MFS transporter {ECO:0000313|EMBL:AHB47320.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_1735_curated_17
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23785..24426)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2I478_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KFB71722.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1735_curated_18
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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24611..25105
DNA (495bp) protein (165aa)
hom; homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3]
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:CCB65716.1}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:CCB65716.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Homoserine dehydrogenase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIB3_HYPSM
SCNpilot_expt_1000_bf_scaffold_1735_curated_19
unknown

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comp(25169..25930)
DNA (762bp) protein (254aa)
Putative cytoplasmic protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B632_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CPR14946.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
putative cytoplasmic protein
SCNpilot_expt_1000_bf_scaffold_1735_curated_20
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26150..26764
DNA (615bp) protein (205aa)
2-hydroxychromene-2-carboxylate isomerase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYM8_9RHIZ
DSBA oxidoreductase {ECO:0000313|EMBL:KFG67997.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1735_curated_21
unknown

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26843..27145
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1735_curated_22
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27653..27946
DNA (294bp) protein (98aa)
Competence protein ComEC n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SEC7_9RHIZ
Competence protein ComEC {ECO:0000313|EMBL:AHB48842.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
ComEC/Rec2-like protein; K02238 competence protein ComEC
Displaying 22 items

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