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SCNpilot_expt_1000_bf_scaffold_5694_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5694_curated_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1189
DNA (1188bp) protein (396aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Dihydroorotase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8U2_9RHIZ
dihydroorotase
SCNpilot_expt_1000_bf_scaffold_5694_curated_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1235..1885
DNA (651bp) protein (217aa)
putative glycerol-3-phosphate acyltransferase PlsY; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1 Tax=Nitratireductor indicus C115 RepID=K2NX95_9RHIZ
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_5694_curated_3
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2586..3053
DNA (468bp) protein (156aa)
DNA protecting protein DprA n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JHA5_HYPSM
DprA; DNA protecting protein DprA; K04096 DNA processing protein
DNA protecting protein DprA {ECO:0000313|EMBL:CCB64359.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5694_curated_4
unknown

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comp(3068..3280)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5694_curated_5
unknown

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3622..6387
DNA (2766bp) protein (922aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952, ECO:0000313|EMBL:CPR15424.1}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952, ECO:0000313|EMBL:CPR15424.1};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
DNA topoisomerase I subunit omega (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BDX9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5694_curated_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6492..8741
DNA (2250bp) protein (750aa)
RNR; ribonuclease R (EC:3.1.13.1); K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895, ECO:0000313|EMBL:CCB64356.1}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895, ECO:0000313|EMBL:CCB64356.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003634C5E
SCNpilot_expt_1000_bf_scaffold_5694_curated_7
unknown

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comp(8644..8847)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5694_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8900..9373
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000375B5C5
Zinc-finger protein {ECO:0000313|EMBL:AHB48680.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5694_curated_9
unknown

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9370..10194
DNA (825bp) protein (275aa)
MutT/nudix family protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J821_9RHOB
NUDIX hydrolase {ECO:0000313|EMBL:CPR15417.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_5694_curated_10
unknown

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10985..11224
DNA (240bp) protein (80aa)
Rare lipoprotein A n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RDQ1_9CYAN
Lipoprotein A {ECO:0000313|EMBL:CPR15234.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
rare lipoprotein A
SCNpilot_expt_1000_bf_scaffold_5694_curated_11
unknown

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11417..11641
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5694_curated_12
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11712..12110
DNA (399bp) protein (133aa)
Putative glyoxalase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z7L2_9BRAD
putative glyoxalase
Putative glyoxalase {ECO:0000313|EMBL:BAM89071.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_5694_curated_13
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12094..12480)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000371BCEC
Uncharacterized protein {ECO:0000313|EMBL:AHB48305.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCNpilot_expt_1000_bf_scaffold_5694_curated_14
unknown

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comp(12913..15120)
DNA (2208bp) protein (736aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037639F1
TonB-denpendent receptor {ECO:0000313|EMBL:CPR20990.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
Displaying 14 items

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