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SCNpilot_expt_1000_bf_scaffold_5623_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5623_curated_1
unknown

Not on your lists

1..99
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122..1090)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGP0_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64349.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5623_curated_3
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1214..1531)
DNA (318bp) protein (106aa)
dapE; N-succinyl-diaminopimelate deacylase (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Succinyl-diaminopimelate desuccinylase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J4W0_HYPSM
SCNpilot_expt_1000_bf_scaffold_5623_curated_4
unknown

Not on your lists

2431..2589
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2632..3405)
DNA (774bp) protein (258aa)
Chemotaxis protein CheY n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBY9_9RHIZ
Chemotaxis protein CheY {ECO:0000313|EMBL:AHB47489.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
two component transcriptional regulator PhoB, winged helix family protein
SCNpilot_expt_1000_bf_scaffold_5623_curated_6
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3494..4213)
DNA (720bp) protein (240aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7I1_9RHIZ
phosphate uptake regulator PhoU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5623_curated_7
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4350..5687)
DNA (1338bp) protein (446aa)
histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003642741
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCNpilot_expt_1000_bf_scaffold_5623_curated_8
unknown

Not on your lists

comp(5829..6197)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_curated_9
unknown

Not on your lists

comp(6202..6774)
DNA (573bp) protein (191aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6840..7163
DNA (324bp) protein (108aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5B111
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_5623_curated_11
Mycobacterium liflandii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7918..8334
DNA (417bp) protein (139aa)
gloA_3; glyoxalase, GloA_3 (EC:4.4.1.5)
Glyoxalase, GloA_3 {ECO:0000313|EMBL:AGC63908.1}; EC=4.4.1.5 {ECO:0000313|EMBL:AGC63908.1};; TaxID=459424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium liflandii (strain 128FXT).;"
Glyoxalase, GloA_3 n=3 Tax=Mycobacterium RepID=L7VBV0_MYCL1
SCNpilot_expt_1000_bf_scaffold_5623_curated_12
unknown

Not on your lists

8327..8530
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5623_curated_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8534..10093
DNA (1560bp) protein (520aa)
Carbohydrate kinase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8C2_9RHIZ
carbohydrate kinase
Carbohydrate kinase {ECO:0000313|EMBL:AGK58477.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_5623_curated_14
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10325..11212
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1E2_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86948.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_5623_curated_15
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11150..12013)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1F4_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86963.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_5623_curated_16
unknown

Not on your lists

comp(12155..12823)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000369492A
Extensin family protein {ECO:0000313|EMBL:CPR22518.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
Extensin family protein
SCNpilot_expt_1000_bf_scaffold_5623_curated_17
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13088..13720
DNA (633bp) protein (211aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KMM3_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EWY39415.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_expt_1000_bf_scaffold_5623_curated_18
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13792..14718
DNA (927bp) protein (309aa)
Dihydrodipicolinate synthetase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3U915_ADVKW
dihydrodipicolinate synthetase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_5623_curated_19
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14726..15913
DNA (1188bp) protein (396aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
UPI0003CDEAA0 related cluster n=1 Tax=unknown RepID=UPI0003CDEAA0
uncharacterized Fe-S protein
SCNpilot_expt_1000_bf_scaffold_5623_curated_20
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15910..16767
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037C4A2D
Epimerase {ECO:0000313|EMBL:AHB47626.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_5623_curated_21
unknown

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16946..17119
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying 21 items

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