ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7433_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7433_curated_1
unknown

Not on your lists

1..222
DNA (222bp) protein (74aa)
NADH-ubiquinone oxidoreductase chain L {ECO:0000313|EMBL:CPR22455.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CPR22455.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
SCNpilot_expt_1000_bf_scaffold_7433_curated_2
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(574..1224)
DNA (651bp) protein (217aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000380D571
SCNpilot_expt_1000_bf_scaffold_7433_curated_3
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1233..2147)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037DEB76
Protein YicC {ECO:0000313|EMBL:BAQ17604.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7433_curated_4
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2621..3835
DNA (1215bp) protein (405aa)
luciferase family protein; K14733 limonene 1,2-monooxygenase [EC:1.14.13.107]
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases n=1 Tax=uncultured alpha proteobacterium HF0130_20P23 RepID=E0XTA1_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_7433_curated_5
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3872..4399
DNA (528bp) protein (176aa)
sulfopyruvate decarboxylase n=1 Tax=alpha proteobacterium SCGC AAA536-K22 RepID=UPI0003B6CD77
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_expt_1000_bf_scaffold_7433_curated_6
unknown

Not on your lists

4411..4569
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7433_curated_7
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4882..5166
DNA (285bp) protein (95aa)
phosphonopyruvate decarboxylase (EC:4.1.1.82); K09459 phosphonopyruvate decarboxylase [EC:4.1.1.82]
Putative phosphonopyruvate decarboxylase n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1B6M0_RHOOB
Aldehyde dehydrogenase {ECO:0000313|EMBL:KFX28379.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
SCNpilot_expt_1000_bf_scaffold_7433_curated_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5236..6876
DNA (1641bp) protein (547aa)
Fructose-1,6-bisphosphatase II n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GSN1_9BRAD
Pc21g19560
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_7433_curated_9
unknown

Not on your lists

comp(6949..7842)
DNA (894bp) protein (298aa)
RNA polymerase sigma factor RpoH n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B572_9RHIZ
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961, ECO:0000313|EMBL:CPR14793.1}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
RNA polymerase factor sigma-32
SCNpilot_expt_1000_bf_scaffold_7433_curated_10
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(8162..8668)
DNA (507bp) protein (169aa)
Protein-tyrosine phosphatase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IB74_9CHLR
Protein-tyrosine phosphatase {ECO:0000313|EMBL:EFO81559.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7433_curated_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8685..9383)
DNA (699bp) protein (233aa)
Putative NADH-dependent flavin oxidoreductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TS40_9PROT
Putative NADH-dependent flavin oxidoreductase {ECO:0000313|EMBL:EDP64468.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
oxidoreductase
Displaying 11 items

View Taxonomy